3GNI,2WTK


Conserved Protein Domain Family
PK_STRAD

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cd08216: PK_STRAD 
Click on image for an interactive view with Cn3D
Pseudokinase domain of STE20-related kinase adapter protein
The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the serine/threonine kinase (STK), LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270856
Aligned: 13 rows
Threshold Bit Score: 442.119
Created: 2-Aug-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingMO25LKB1
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3GNI_B; human STRAD-alpha binds ATP; contacts at 4A.
  • Comment:Although STRAD is a pseudokinase without catalytic activity, it binds ATP and this binding enhances the affinity of STRAD to MO25.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #####   # #               # #                                              
3GNI_B        28 ELLTVIGKGFEDLMTVNLARYkp---tgEYVTVRRINLEaCSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNeLWVV 104 human
P83098         7 ISDYKLLEILKNGMIGTVYKAedi--nnKCLAVKKVSMD-QPMEKLTLLFNEVLTVRRLQHRNINTIVSCFLYKQyVYLT 83  fruit fly
XP_001951624  11 TMCSVLGSCFSDRAVVFLGKHnk---sgNLVAMKNFNLDsMSKTDCQLIQDEIYNTRQLMHPNLIPYVTSFLDKSqLYVV 87  pea aphid
XP_002007793   6 LTDYEFTKAFKHGKFCSVYKAnct-vnnRVLVVKKYSLEvDDDAELKRLFAEIQCCRQFNHPNINKILNSFIVDSdVYVL 84  Drosophila moja...
2WTK_B        12 ELLTVIGKGFEDLMTVNLARYkp---tgEYVTVRRINLEaCSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNeLWVV 88  human
Q9C0K7        59 ELQVEIGRGFDNLTSVHLARHtp---tgTLVTIKITNLEnCNEERLKALQKAVILSHFFRHPNITTYWTVFTVGSwLWVI 135 human
XP_783541     14 TLLTLIGRNFEGNAVVHIARHvs---sdNLVAVRRINLD-KVKDSFVELHQECNFSKLMQHEHILPHYTSFVNANeLWVV 89  purple urchin
XP_001608122  10 SSGMALGVSSSGAGIVQLALHkt---tnTYVVIKKYFIDdKDSEDYSLIQQEIVTTRHLQHPNVLPYLNAFVSGHdIYVI 86  jewel wasp
XP_002423030  11 DVVSLLGRCCGQIGMVLLAKHkk----kTLVAVKKFDLEkADHKDVLQIQKEIIIMRQLKHNNVLSYEFCFVDNQsVYVV 86  human body louse
XP_002129331   8 AFYRLIGKCNFSNTNIYLVKCka---snTLLAVKETDLDsASTECFKFLQQELWISRSLCHKNVLVHNQTLIENGkLYVV 84  Ciona intestinalis
ELT89602      22 ELHAVIGTCCNGAGTVHLARHlp---tqKLLAVKKIHLD-AQMVDMKYLEHEVLMNRTMSHVNIVSCHCTFVHDNhLWII 97  Capitella sp. I...
EFX72511      32 NILKSFGQCFDSGVVLLATKKssyqsdqSFLAVRKYNLE-DCHKEICRFLKEIWLMRNLSHENLLTCIDSFVIGHsLCIV 110 common water flea
EDS36493      14 ELKVELAKCFNGIVYLAQHRPs-----rRHVAVKKFLME-DIKNDFNFIMEESKHLREFDHPNILSYHTAFVHNLdLYFI 87  southern house ...
Feature 1        ####   #  #                                         ## #            #           
3GNI_B       105 TSFMAyGSAKDLICTHfmdgMNELAIAYILQGVLKALDYIHhMGYVHRSVKASHILISvdGKVYLSGLRSNLSMISHGqr 184 human
P83098        84 YKFMCfGNCEVLLKNVytsgFPEVAIALILKDVLSALTYIHsEHYVHGSVRAKHILLSp-RKAVLSNFSYCQSFISQGek 162 fruit fly
XP_001951624  88 FPLMGyGSCRDLLRNHfvegLPETVIAFVLKDVLQGLEYIHnKGLVHRAIKAGHILIRadGHASLSGLRSMCPIDKRSn- 166 pea aphid
XP_002007793  85 HPYMCfGTCELLLKTTfcngFPETLIALIFKDVLAALLYIHsNDFVHGSVRALHILLDg-NKAVLSNFHESRSFIKHGkk 163 Drosophila moja...
2WTK_B        89 TSFMAyGSAKDLICTHfmdgMNELAIAYILQGVLKALDYIHhMGYVHRSVKASHILISvdGKVYLSGLRSNLSMISHGqr 168 human
Q9C0K7       136 SPFMAyGSASQLLRTYfpegMSETLIRNILFGAVRGLNYLHqNGCIHRSIKASHILISgdGLVTLSGLSHLHSLVKHGqr 215 human
XP_783541     90 MPLMEhGSARDLLDRNcpdgLKESVIAQIMRDVVLALDYLHrMGFIHRSVKASHILLTqsGGVHLSGLRTAVSMVEEGkr 169 purple urchin
XP_001608122  87 SPLMAyGSCSNLIKEHfnegFPELAIAFIIKDVLQGLDYIHkKGFIHRALRASHILISgsGQACICGMRYSCEMFKSGkw 166 jewel wasp
XP_002423030  87 TQLCGfGSCTDLIANHfpvgLPELAICFILRDVLNALAYIHkKGIIHRAIRASHILVSanGKSMITGFRYAVHMVEGGkr 166 human body louse
XP_002129331  85 SEMMDyGSCTDLMESHfkygLPELVIAYTLREVLNALEYIHsLQCIHRGVKASHIVLSsdGSVKLSGHRNMISVLNKDfr 164 Ciona intestinalis
ELT89602      98 LPLMAfGSSSDLLAAHfsegLPEAAIAFILYEVLKGLEYLHsKGVIHRSVRASHILISaeGHVCLSGLRFAYSMLQEGqr 177 Capitella sp. I...
EFX72511     111 TPLVDyGSALDLIQTHfsngFPEVVIAGILRDVLHALVYLHsKGYIHRSVKASHILISskGQVMLTGLRDAYCIVEKGrw 190 common water flea
EDS36493      88 LPLMCfGSCRDTMSNYfetgLPEIVLACILRDVVNGLEYLHrKGYIHRSIRASHIFLNe-SRAVIGGFRVCTSFLGEGkr 166 southern house ...
Feature 1                                                                                        
3GNI_B       185 q-rvvHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLnGTVPCLLDTSTI 263 human
P83098       163 k-tfiFGSTVGIEKELYWTAPEVLYQNLSGYTEKIDIYSIGITCCEMANGFQPFKDTELTYMYIEKVrGSLQVLLDKNSL 241 fruit fly
XP_001951624 167 ----lHSLPLQSANNLNWSSPEMLEQNLLGYNEKSDIYSIGITSCELANGFVPFAETDTTFMLTQKVkGLIPHLLDCTTC 242 pea aphid
XP_002007793 164 ---kpVLHGISHEKHLNWAAPEVLDQNIHGYTEKSDIYSVGITACELANGIQPYFETQPTLMYTEKIrGNVPSLLDRSTY 240 Drosophila moja...
2WTK_B       169 q-rvvHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLnGTVPCLLDTSTI 247 human
Q9C0K7       216 h-ravYDFPQFSTSVQPWLSPELLRQDLHGYNVKSDIYSVGITACELASGQVPFQDMHRTQMLLQKLkGPPYSPLDISIF 294 human
XP_783541    170 lkavfDFPTRNAVRNLPWLATEVLEQNLLGYDAKSDIYSVGITACELSNGCVPFSDMVPMKMLLEKIsGTTPKLLDCSTL 249 purple urchin
XP_001608122 167 q-rtiFDFPKSSINNLKWLSPELLQQDLRGYNEKSDIYSLGITICELANGVVPYADVQDTLMLTEKVrGCTPNIIDRSTY 245 jewel wasp
XP_002423030 167 k-kciHCFPTSAAVNLNWLSPELLEQSLEGYNEKSDIYSLGITSAELANGCVPFSDVPATLMLTEKVrGCAPQLIDQTTY 245 human body louse
XP_002129331 165 s-apvHDYPRHDTFLLPWLSPEILQQNMQGYGPESDIYSLGITACELANGHAPFTDMPSTQMLLEKLnGTMPCLLDKTTV 243 Ciona intestinalis
ELT89602     178 s-kivHDFPENFVNSLLWSSPELLGQSFAGYNTKTDIYSVGITACELGNGGVPFADMPVTQMLLEKMeGCTPQLIDMQTM 256 Capitella sp. I...
EFX72511     191 q-tavFDYPIDAEQNFCWLSPEVLQQNLRGYCEKSDIYSLGITACELANGVAPFVDLPSTQLLINKFnGPPPQIWDCTTV 269 common water flea
EDS36493     167 v-ktmHELPPHSTKSLNWLAPEVLAQNLLGYTEKSDIYSLGIMTCELANGVEPFSNFQTTLMLTEKMrGYQPQLLDCTTI 245 southern house ...
Feature 1                                                                                        
3GNI_B       264 PAeeltmspsrsvansg-lsdslttstprpsnGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQik- 341 human
P83098       242 LEnqgsls------------------lehtnkRIARDVIVNKSFSENFHQFVELCLNKNPLSRWAASKLMTHSFLKQc-- 301 fruit fly
XP_001951624 243 YPyednaadngy-----------qseetigvnATPVSNVYTRMFTEEFHNLVELCCQRDPESRPSASNLLAHTFTKQvk- 310 pea aphid
XP_002007793 241 TMllddqgki---------------pfenatsRRTYDIYSQRVLSDDFHQFVEICLNRNAENRWSAKKLMTHAFFKQc-- 303 Drosophila moja...
2WTK_B       248 PAeeltmspsrsvansg-lsdslttstprpsnGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQik- 325 human
Q9C0K7       295 PQsesrmknsqsgvdsgigesvlvssgthtvnSDRLHTPSSKTFSPAFFSLVQLCLQQDPEKRPSASSLLSHVFFKQmk- 373 human
XP_783541    250 CDvdgvqpqdtgl--------rvdsgiggstgLANVPDPYQRRFSTHFHDFMEVCLRRDPVDRPSASQLLQHPFFKQvr- 320 purple urchin
XP_001608122 246 PLdmmdvkqse-------------ekvnnenpTQNTEVMSTRKFSEPFHAIAELCLECDPSNRPGINQLLAHSFFKQcr- 311 jewel wasp
XP_002423030 246 PLyesesen-----------------nlvnciVSSNDHKATRLFSESFHQFTNICLQKDHRLRPSAQQLLSHSFFKQlrq 308 human body louse
XP_002129331 244 PLtndsvle-----------------nmdpniQEQHHATGVRSFSPAFHKFLLSCLQRDPAQRPSASELLNHPFFNQls- 305 Ciona intestinalis
ELT89602     257 PElqqa----------------------tpgaHGEESLPFQRTFSQHFKNFVEVCLSPDPKNRPTASSLLQHSFFKQirr 314 Capitella sp. I...
EFX72511     270 PPpehriilpnqpad----sgvfdgvtacsniDARLEAAYQRTFSRSFHRFTMLCVQLDPGLRPGSTQLLKHPFIQSir- 344 common water flea
EDS36493     246 PSeevfaqame------------sggvgdsgsSQTRQIYASRQFSDALHKFAELCLVANPNLRPNAADLLAHAVFKQc-- 311 southern house ...
Feature 1                      
3GNI_B       342 -rrASEALPELLRP 354 human
P83098       302 ---RNTSLLDQLKD 312 fruit fly
XP_001951624 311 --rVNVKVTDLLRP 322 pea aphid
XP_002007793 304 ---RHASITDYIKK 314 Drosophila mojavensis
2WTK_B       326 -rrASEALPELLRP 338 human
Q9C0K7       374 -eeSQDSILSLLPP 386 human
XP_783541    321 -ksSSDVLGPMLQA 333 purple urchin
XP_001608122 312 --kANTTLLNLLKD 323 jewel wasp
XP_002423030 309 ksnNPNFMGDLLHP 322 human body louse
XP_002129331 306 --mLEINLETLLKP 317 Ciona intestinalis
ELT89602     315 -ksGMESLVSLLHP 327 Capitella sp. I Grassle & Grassle, 1976
EFX72511     345 -kgSVANWLEYLTL 357 common water flea
EDS36493     312 ---KHTSIREQFAA 322 southern house mosquito

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