2A65,2QJU,3F3C,3F48,3F4J,3GJD,3GWU,4M48


Conserved Protein Domain Family
SLC6sbd

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cd10324: SLC6sbd 
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Solute carrier 6 family, neurotransmitter transporters; solute-binding domain
This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.
Statistics
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PSSM-Id: 271359
Aligned: 92 rows
Threshold Bit Score: 288.269
Created: 7-Nov-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site 2 [ion binding site]
Evidence:
  • Comment:based on Aquifex aeolicus LeuT (SLC6) with structure
  • Comment:One of two Na+ binding sites in Aquifex aeolicus LeuT. It binds the Na+ ion designated Na2, and appears conserved in Vibrio parahaemolyticus vSGLT and other SLC5 proteins
  • Structure:2A65: Aquifex aeolicus LeuT binds the Na ion designated Na2.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #                                                              
2A65_A      6 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGgAFMIPYIIAFLLVGIPLMWIEWAMGRYGGaqghgttpaifyllw 85  Aquifex aeolicus VF5
ABW68073   13 KHWSSEPAFIASMAAAAVGLGNLWRFPYIMGENGGgVFVVAYLIALLVVVMPIMILEVAAGRLSKgstvgt------yre 86  Desulfococcus oleo...
ABN57246    4 EEWSSTLGFILASIGSAVGIGNIWRFPYVVGANGGgAFLIPFLIAVLLFGLPLMVLELAIGRSTGtsvisa------frs 77  Methanoculleus mar...
AEA47768    4 EKWSSRIGFLLAGIGSAVGLGNVWRFPYIVGQNGGgAFLIPYLISVFLFGLPLMLLEFSTGRLFKgsvvss------lkk 77  Archaeoglobus vene...
BAE03244    9 ETWGSYTGFILTTIGSAVGIGSIWRFPYMVSTNGGaSFLLVYIIVLFTFGLAFMVLEFALGMRYRtsivsa------lsm 82  uncultured crenarc...
AEB69044    2 ERWSSRLVFVLAAIGSAVGIGNIWRFPMVVGQNGGgAYLIPYFLAVVCLAVPLMILEMAVGRHWRrnlvas------fgr 75  Methanosaeta conci...
AET65029    2 ERWSSRTAFILASVGSAVGIGNIWRFSSVVGQNGGgAYLVPYLMAVFAFALPLMMLELAVGRRLRgdvvta------fgr 75  Methanosaeta harun...
ADJ26311   16 SVWTSQKAYILASVAGVVGLGNLWRFPYMVGENGGgTFVAVYVICMLTMGLPLYVIEASAGKLAGrgpigt-----frkv 90  Chlorobi bacterium...
NP_224495   6 ASFSSRLGFIFSMIGIAVGAGNIWRFPRVAAQNGGgAFLILWLCFLFLWSIPLIIIELSIGKLTKkapiga-----likt 80  Chlamydophila pneu...
NP_219736   6 TVFSSRLGFILSMMGVAIGAGNIWRFPRMVAQNGGgTFILLWLLFLIIWSIPLIIVELSIGKLTRkapiga-----lirt 80  Chlamydia trachoma...
Feature 1                                                                                     
2A65_A     86 rnRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLvglvpepppnatdpdsilrpfkeflysyigvpkgdepilkps 165 Aquifex aeolicus VF5
ABW68073   87 vgPFGTIYGWFVVLVTVAITSYYLVITGWTLGYSVDAIrgqvrvf-------------------------------eefs 135 Desulfococcus oleo...
ABN57246   78 irQRFAAAGLVIVAVVSLILGYYLVITSWVLAYALFFAfnqpmef-------------------------------daft 126 Methanoculleus mar...
AEA47768   78 irKKFKWIGIAVVSVLTVVLSYYLVITGWILAFFTFTLlgretsfe------------------------------sfaq 127 Archaeoglobus vene...
BAE03244   83 irHRFRFIGLFMIGVTVAILSYYMVVLGWILAYLVMSIlnryqgf-------------------------------egfi 131 uncultured crenarc...
AEB69044   76 agKRFEIVGWLICLIVLLILSYYLVIMGWTLAYLLFSLlgstvtf-------------------------------ssft 124 Methanosaeta conci...
AET65029   76 arPRFRPLGWVVCAVVFSILSYYLVVTGWTLAYVGFSIagegvef-------------------------------adft 124 Methanosaeta harun...
ADJ26311   91 naRWGPWFGRFLILITIAIMSYYLVISGWTLGYAVDAVrgdlksf-------------------------------eeft 139 Chlorobi bacterium...
NP_224495  81 agKKFAWAGGFITLVTTCILAYYSTIVGWGLSYFYYAVsgkihlgndfa------------------------klwtshy 136 Chlamydophila pneu...
NP_219736  81 agPKSAWLGGFIVLVATCILGYYSNIVGWGFSYFFYSLsgkivpgnhfp------------------------qlwahhc 136 Chlamydia trachoma...
Feature 1                                                                                     
2A65_A    166 lfaYIVFLITMFINVSIlirg--iskgIERFAKIAMPTLFILAVFLVIRVFLletpngtAADGLNFLWTPDfeklkdpgV 243 Aquifex aeolicus VF5
ABW68073  136 sgfNSLWFFIATTLLAAvvlar-dvtaIEKLSKLLMPALVAVVLFLVYRASQts----gWEEAKDFFFQVDwsrlwsgkL 210 Desulfococcus oleo...
ABN57246  127 gsyLPLVFFLLSGLAVYvtvrsgvrggIERASRYLIPVLLVILLFLVAVSLTep----gAAEGIGFYLSPDfsrltdpaV 202 Methanoculleus mar...
AEA47768  128 tyfSPLFFVVVTIAASLivmrg-vrkgIEKTSKIMVPALGVLLAVMVIYSLSlp----nAMDGITFYLTPDlsklsdssI 202 Archaeoglobus vene...
BAE03244  132 dtwYPLASYLAVVAINYtivrsglrtgVERFNRYGVIMLFAMLIPLALIGLSmd----rDGLGLRYYTQPDsnrlldphV 207 uncultured crenarc...
AEB69044  125 sslEPLAYFLISVLATGlivslgvnmgIERIVSIMIPFAFLILVALVLFCVSlp----gFHPGMDFFIQPDysmlrrpdV 200 Methanosaeta conci...
AET65029  125 stySPIGYFIISALVMGaivslgikdgIERATKLLIPFSFLLLLGLAAFSSTle----gFGAGWRYLFTPDfsvladplL 200 Methanosaeta harun...
ADJ26311  140 sgyASLWLLLIIAVPTFwilsk-glqgLEQMSRFLLPLLVLIIGGLAVYTQTls----gGSQAREFYFNFEldrfldirT 214 Chlorobi bacterium...
NP_224495 137 qssIPLWAHLTSLGLAYlvirkgivhgIEKCNKILIPAFFLCTIALLLRAVTlp----gAVQGIKQLFSCDkscfsnykV 212 Chlamydophila pneu...
NP_219736 137 qswMPLSCHCLALFLAYciirkgivngIETCNKILIPFFFICALVLLARAVSlp----hAWEGIRLLFVFNkaslcdykV 212 Chlamydia trachoma...
Feature 1                                                                                     
2A65_A    244 WIAAVGQIFFTLSLGFGAIITYASYVrkd-qdiVLSGLTAATLNEKAEVIlGGSISIPAAVAffgvanav-aiakagaFN 321 Aquifex aeolicus VF5
ABW68073  211 WGFAFGQAFYTLAIGQGYLVTYGSFIprk-thlPRACLAVAGVETSIALLaGWMIFPFVFSFgmep---------gqgSA 280 Desulfococcus oleo...
ABN57246  203 WIAAFGQAFFSLSVGMGILLTFGSYLkre--alFRNAAIIAAADMLIAVLaGLVIFPLVFTAgldp---------aagVN 271 Methanoculleus mar...
AEA47768  203 WAAAFGQAFFSLSVGSGILLTYGSYLeek-islVNSSMLITIFDLLVSFMsGLIVFSIASSFgfev---------aagPK 272 Archaeoglobus vene...
BAE03244  208 WSSAIGQAFFSLSIGLGVLVTYASYVreqkqsvVVTSLIIVGSVLVVAFLsGLMVFTMVFANglgd---------vhgTA 278 uncultured crenarc...
AEB69044  201 WSAAIGQAFFSLSVGMGILITYGAHLedd-mdiPQSALIITFSDLLAAMLaGIAIFSLVFTFglep---------aagAE 270 Methanosaeta conci...
AET65029  201 WAAAFGQAFFSLSVGYGILLTYGDYLdeg-igiLNSSLIITFADLAVAILaGLVIFPVVFTYglep---------aagAE 270 Methanosaeta harun...
ADJ26311  215 WQMAAGQAFYSLAVGMGFLIAYGSYVprk-fniINTSAAVALTNAGISIMaGLMMFPIVFTFgiap---------dagSQ 284 Chlorobi bacterium...
NP_224495 213 WIEALTQNAWDTGAGWGLLLVYAGFAskk-tgvVSNGALTAICNNLVSLImGIIIFSTCASLdilgttqlqdgagassIG 291 Chlamydophila pneu...
NP_219736 213 WIEALTQNAWDTGAGWGLLLVYAGFAskq-tslVTNGAITAITNNFISFLmAVIVFSACASLdstemlglregvgasnIG 291 Chlamydia trachoma...
Feature 1                                      #  ##                                          
2A65_A    322 LGFITLPAIFSqta----ggtFLGFLWFFLLFFAGLTSSIAIMQPMIAFLedelk-lsrkHAVLWTAAIVFFSAHLVmfl 396 Aquifex aeolicus VF5
ABW68073  281 LAFETLPRVFAqmp----gggWLAVLFFGLFFAAAFTSSLAGLKVVTAAVaeefqlrnttAVTVVTGVMLVLGTASAlsf 356 Desulfococcus oleo...
ABN57246  272 LAFITLPTAFTeir----ygmVLGTLFFLMLFAAALTSAVSMLEVPTAALmdsygyprkrATLLVFAAVMLFGLPSAlsy 347 Methanoculleus mar...
AEA47768  273 LAFSTLPQVFDkvp----ygfFLEGIFFLLLFFAALTSAISMLEIGVAVLidetsldrfkSTSLLSSIILVLGFPAAlsy 348 Archaeoglobus vene...
BAE03244  279 LVFIAMPKIIAgme----ygyLLGITFFLLLFIAGITSSISMLQIPVSALedtfkfskarATMVITMLSLALGIPSAlsy 354 uncultured crenarc...
AEB69044  271 LAFTTLPRAFElmp----ygqIFSVAFFALLFSAALTSSISMMEMNVAAImgqtkssrkrASILLMILLVALGTPSAlsy 346 Methanosaeta conci...
AET65029  271 LAFSTLPRAFEvmp----ygsAFAVAFFALLFSAAMTSAVSMLEVGAASVaaatgisrrrVSFALTAGTIALGLPSAlsy 346 Methanosaeta harun...
ADJ26311  285 LSFTALPNLFPeis----ggfFIGIAFYVLLALAAFTSCVGGIAVAMAPLqdefhmtkrkAALVVVVLVTVLGIPSAlsf 360 Chlorobi bacterium...
NP_224495 292 ITFIYLPELFTrlpggiylttLFSSIFFLAFSMAALSSMISMLFLLSQTLaefgi-kpyiSETLATIIAFVLGIPSAlsl 370 Chlamydophila pneu...
NP_219736 292 MAFIYLPELFTrlphahilstFFSAIFFLAFSMAALSSMISMLFLLSQTLtefgi-kkhiAESSATIAAFLIGVPSAlnl 370 Chlamydia trachoma...
Feature 1                                                                                     
2A65_A    397 nk-----------sldemDFWAGTIGVVFFGLTELIIFFWIFGADKAweeinrg------giikvprIYYYVMRYITPAF 459 Aquifex aeolicus VF5
ABW68073  357 tplewri--agepvldmiDRVAGGDVIIFSGLTGAALLCWFIPPKRIrtvlgt--------anrwweWRIYLVGRYLPVL 426 Desulfococcus oleo...
ABN57246  348 talnlea--lgmpfldlaDYVFGTIGLIVAGLIISIVGGWFMTRTRIyaeigg--------cgwqqkVYMALIRYGVPAV 417 Methanoculleus mar...
AEA47768  349 sgislqf--tgrpvldlmDETFGSFGIPLTALLLSTSISWFLDNLVIaeeinkn------akwkigkTVVFLTRYFIPIV 420 Archaeoglobus vene...
BAE03244  355 spvhlsi--ssmpvldafDWIFGTIALAVSATLMAVAVAWFMSRDEMmeqvnmn------sriripsRMLDLVRILLPAM 426 uncultured crenarc...
AEB69044  347 ssldlrf--fgsrildlmDVSVGTIGLPIAALLVAITFRWLIDDDVLagqvhl--------serwlrTLSILTKYVIPAA 416 Methanosaeta conci...
AET65029  347 ssaalev--ggvrvldimDDTVGGLGLVLTATLIAVTFTWFMDGRALaeemg-----------rgrrLALPIAKYAVPAV 413 Methanosaeta harun...
ADJ26311  361 tplelsi--ggkpfldvvDQLTGSGVIVVAGIAGAAFITWLLPRKSLiesinspdkk-lgpmvfsadWIITLGRYLPVAA 437 Chlorobi bacterium...
NP_224495 371 tffs-------nqdtvwgVALIVNGLIFIYAALVYGFPKLKKEVINAapgdlrlnkafdyiikyllpIEGILLLGWYFYE 443 Chlamydophila pneu...
NP_219736 371 qffdnqdivwgialilngMIFIYSALSYGIKRLRQDVINSVPGDYKLktyfdilvkfllplegvlllAWYFYEGAMLPQA 450 Chlamydia trachoma...
Feature 1              
2A65_A    460 LaVLLVVWA 468 Aquifex aeolicus VF5
ABW68073  427 VlLWAVLIF 435 Desulfococcus oleovorans Hxd3
ABN57246  418 LlITLVGSF 426 Methanoculleus marisnigri JR1
AEA47768  421 LlYVLLTRL 429 Archaeoglobus veneficus SNP6
BAE03244  427 IiATLMKIL 435 uncultured crenarchaeote 45-H-12
AEB69044  417 LlLITAAMI 425 Methanosaeta concilii GP-6
AET65029  414 MaMTLLARA 422 Methanosaeta harundinacea 6Ac
ADJ26311  438 VlLVIIMWL 446 Chlorobi bacterium BL-DC-9
NP_224495 444 GlFPENGQW 452 Chlamydophila pneumoniae CWL029
NP_219736 451 YwWNPFVSY 459 Chlamydia trachomatis D/UW-3/CX

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