2CRJ


Conserved Protein Domain Family
HMG-box_HMG20

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cd21980: HMG-box_HMG20 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in the high mobility group protein 20 (HMG20) subfamily
The HMG20 subfamily includes HMG20A and HMG20B. HMG20A, also called HMG box-containing protein 20A, HMG domain-containing protein 1, HMG domain-containing protein HMGX1, HMGXB1, or iBRAF, is a chromatin-associated protein involved in neuronal differentiation and maturation. It is required for SNAI1-mediated epithelial to mesenchymal transition. HMG20A acts as an inhibitor of HMG20B. HMG20B, also called SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related, SMARCE1-related protein (SMARCE1R), BRCA2-associated factor 35 (BRAF35), HMG box-containing protein 20B, HMG domain-containing protein 2, HMG domain-containing protein HMGX2, Sox-like transcriptional factor, or structural DNA-binding protein BRAF35, is a DNA binding factor that acts as a repressor of erythroid differentiation. It is required for correct progression through the G2 phase of the cell cycle and entry into mitosis. It is also required for RCOR1/CoREST mediated repression of neuronal specific gene promoters. HMG20B is a core subunit of the Lys-specific demethylase 1/REST co-repressor 1 (LSD1-CoREST) histone demethylase complex. Both HMG20A and HMG20B contain one HMG-box.
Statistics
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PSSM-Id: 438796
Aligned: 62 rows
Threshold Bit Score: 101.855
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ## #####  ##      #            ##  #  ##      #   #  #   #  #                 
2CRJ_A         7 GPKAPVTGYVRFLNERREQIRTRHPd-lPFPEITKMLGAEWSKLQpaEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCT 85  house mouse
RNA03218     173 APKAPLNGYLVYFNEERSEMRVKNPn-iGFGELTKIIAAKWKELPadEKQKYINEAELDKERYNKEMADYKKSDAYRQYL 251 Brachionus plic...
ETN63920      75 APKHPLTGYVRYMNEHRDGVRQKHPn-lSHMDLTKLMAEDWSKLPedKKKPYLEAAEADKERYNKEILEYKMTKPAPAPA 153 Anopheles darlingi
KXJ74782      64 APKHPLTGYVRYMNEKRDAFRLKHPn-lSVMEITKILAEEWGTLSeeVKKPFLEAAEADRERYHREVTEYKQNSEASKKP 142 Asian tiger mos...
TMW47443     207 APKMPLTGYVRYMNDRRESLRKEHPt-kTAMEHTKMIGEEWHSLPadVKASYLKAADVDKQRYVKELDIFLKSRPDVLAS 285 grey fleshfly
KAB7504578   116 APKGPLSGYMLFMNEQREILKQSEKk-lGFQETNKIVAQKWSQLEgsEKQKYLEAAEADKGRYQQEVEEYKKTDTYKKFV 194 Armadillidium n...
XP_026481208  54 APKQPLTGYIRFMNERRESLKAEKPt-lGFVELTRLLAEEWGSLEaaKKKQYLDAAEQDRERYLREVDEYKQNAAKTVPA 132 cat flea
XP_018018948 155 APKAPLSGYMLYMAAQREELRLSESp-pSFAELAKIVAHKWAGMDaaQKQKYLDASEVEKERYQKELLVYTKTDSYKNFM 233 Hyalella azteca
XP_014676353 211 SPRPPVTGYLLYLRKRRAELRSSNGgalSPAEITRHIGNEWTHLGasQKKEYLDEAERSKTRYVAEMQAYRATDQPADGS 290 Priapulus caudatus
XP_027221367  35 APKGPLSGYMLFMGDQREIIRQTHPg-lAFHEITKLVAQRWAQLDteSKTKYLEAAEADKERYQKELEEYQKTDAYKNFI 113 Pacific white s...
Feature 1          
2CRJ_A        86 ES 87  house mouse
RNA03218     252 KE 253 Brachionus plicatilis
ETN63920     154 PA 155 Anopheles darlingi
KXJ74782     143 KT 144 Asian tiger mosquito
TMW47443     286 EL 287 grey fleshfly
KAB7504578   195 EN 196 Armadillidium nasatum
XP_026481208 133 ET 134 cat flea
XP_018018948 234 AQ 235 Hyalella azteca
XP_014676353 291 QL 292 Priapulus caudatus
XP_027221367 114 MK 115 Pacific white shrimp

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