Conserved Protein Domain Family
RRM_PPARGC1A_like

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cd12357: RRM_PPARGC1A_like 
RNA recognition motif (RRM) found in the peroxisome proliferator-activated receptor gamma coactivator 1A (PGC-1alpha) family of regulated coactivators
This subfamily corresponds to the RRM of PGC-1alpha, PGC-1beta, and PGC-1-related coactivator (PRC), which serve as mediators between environmental or endogenous signals and the transcriptional machinery governing mitochondrial biogenesis. They play an important integrative role in the control of respiratory gene expression through interacting with a number of transcription factors, such as NRF-1, NRF-2, ERR, CREB and YY1. All family members are multi-domain proteins containing the N-terminal activation domain, an LXXLL coactivator signature, a tetrapeptide motif (DHDY) responsible for HCF binding, and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In contrast to PGC-1alpha and PRC, PGC-1beta possesses two glutamic/aspartic acid-rich acidic domains, but lacks most of the arginine/serine (SR)-rich domain that is responsible for the regulation of RNA processing.
Statistics
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PSSM-Id: 409793
Aligned: 6 rows
Threshold Bit Score: 147.958
Created: 27-Oct-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9UBK2        675 ERRVIYVGKIrpdTTRTELRDRFEVFGEIEECTVNLRd-dGDSYGFITYRytcDAFAALENGytlrrsnetDFELYFCGR 753  human
Q5VV67       1541 ERRVVFIGKIpgrMTRSELKQRFSVFGEIEECTIHFRv-qGDNYGFVTYRyaeEAFAAIESGhklrqadeqPFDLCFGGR 1619 human
XP_007904411  759 EHRIVYVGKLtcgMTRSEVMRRFEAFGEIEECKVLACe-kGDQYGLVTYRyshDASLALENGhdlqkqndpALQLYYGAL 837  elephant shark
EFX78301        2 ERRVIYVGKLadgTTRSDLRQRFEPFGPVVDISLHFRe-rGDNYGFVTFAykvDAYEAVEHGnddp--hlpKYDLSFGGR 78   common water ...
NP_730836     905 ERRIVYVGRIeqeTTKEILRRKFLPYGSIKQITIHYKe-nGMKYGFVTYEraqDAFTAIDTShrds--qisMYDISFGGR 981  fruit fly
Q86YN6        900 EGRVVYIQNLssdMSSRELKRRFEVFGEIEECEVLTRnrrGEKYGFITYRcseHAALSLTKGaalrkrnepSFQLSYGGL 979  human
Q9UBK2        754 kqfFKSNYADLD 765  human
Q5VV67       1620 rqfCKRSYSDLD 1631 human
XP_007904411  838 rrfCKASYTNLD 849  elephant shark
EFX78301       79 rafCKETYADLD 90   common water flea
NP_730836     982 rafCRSSYADLD 993  fruit fly
Q86YN6        980 rhfCWPRYTDYD 991  human
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