Conserved Protein Domain Family
Cir_N

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smart01083: Cir_N 
N-terminal domain of CBF1 interacting co-repressor CIR
This is a 45 residue conserved region at the N-terminal end of a family of proteins referred to as CIRs (CBF1-interacting co-repressors). CBF1 (centromere-binding factor 1) acts as a transcription factor that causes repression by binding specifically to GTGGGAA motifs in responsive promoters, and it requires CIR as a co-repressor. CIR binds to histone deacetylase and to SAP30 and serves as a linker between CBF1 and the histone deacetylase complex.
Statistics
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PSSM-Id: 198151
Aligned: 42 rows
Threshold Bit Score: 29.0459
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAG09969       13 DFHPASKSNIKkVWIAEQKLTFEKTKQEDLMQAYLKE 49   spotted green pufferfish
XP_001514863   13 DFHPASKSNIKkVWMAEQKISYDKKKQEELMQQYLKE 49   platypus
XP_988506      13 DFHPASKSNIKkVWMAEQKISYDKKKQEELMQQYLKE 49   house mouse
XP_002068169   13 FFHPASRDNLKrVWMAEQQAEAYKKKQEELRNQYEKE 49   Drosophila willistoni
NP_001071668   13 DFHPSSRDNIKrVWMRQQKLEHDQKRQEEMMEQYRKE 49   Ciona intestinalis
XP_003111451   13 DFHPSAFRNLKmVWEARQKKSLEDKRQEELRVAYEKE 49   Caenorhabditis remanei
XP_667301      18 HFHPGNSKNREkVWLAEEKLKEEERKQEELLKKRKKE 54   Cryptosporidium hominis TU502
XP_002869996   47 PWHPLSYPNQRrKWIAEQTHAQHDRRAEEVAREFAQE 83   Arabidopsis lyrata subsp. lyrata
XP_001465061   14 SFHPLTYRNLRrVEQLKEEAELNKQKAEERQKELQRD 50   Leishmania infantum JPCM5
XP_828319      14 SFHPLTFQNLSrVERGLEKEEEKKKAKEQRNAELLHD 50   Trypanosoma brucei TREU927
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