4BLU,2OO3


Conserved Protein Domain Family
RlmJ

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COG2961: RlmJ 
23S rRNA A2030 N6-methylase RlmJ [Translation, ribosomal structure and biogenesis]
23S rRNA A2030 N6-methylase RlmJ is part of the Pathway/BioSystem: 23S rRNA modification
Statistics
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PSSM-Id: 442201
Aligned: 269 rows
Threshold Bit Score: 293.545
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BLU_A         2 LSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAY 81 
WP_012030600   2 LSYRHSFHAGNYADVFKHFCLYQTLTFMKRKEKPLLYFDSHAGAGFYDLHSAHAEKTGEYCDGIMRLYAAQQLPPALIEF 81 
WP_012071404   2 LSYRHIYHAGNHADILKHLTVSQICRHFIKKDAPFFYLDTHAGIGQYSLNSEQAQKNKEFHSGIARLLTEDNLPEPLEGL 81 
WP_015260152   2 LSYQHQYHAGNSADVHKHLLLWLVLDALLSRPKPFVVLDLYAGSGEYPLTTGAAARSGEWRAGIGRLWDLTGGPAPLQAF 81 
WP_025330859   2 LSYRHAFHSGNHADILKHYCLMTVLEYFKLKDKPFCYVDTHAGAGLYSLISKEAQKVGEYREGIGRLLAATNLDNSLKQF 81 
WP_044618648   2 LSYRHSFHAGNHADILKHLTLYLVAGYLTRKDKPLVYVDTHAGAGMYQLNQKHSQQNKEYLTGIQKLYDAENLPPMISDF 81 
WP_002641074   2 LSYRHAFHAGNHADVLKHFLLYLVLDYYNQKDKAYWYIDTHSGAGIYDLRGEQAQKVGEFADGVARLLAAETLPTQLHDF 81 
WP_108126198   2 LSYRHAFHAGNHADMLKHLTLALCADYLTRKPKPLVYVDTHAGAGAYRLTSNHAQKKREFETGIGVLNNAPNPPEEVRFF 81 
WP_003785103   2 LSYRHAFHAGNHADVLKHFILYAVLDYFNQKDKAYWYIDTHSGAGLYDLHGEQAQKVGEFADGIAKLQAADNLSAPVQDF 81 
WP_004142847   2 LSYRHAYHAGNHADLLKHYLLTRTLAYYNQKPKPYDYIDTHAGAGYYDLTAAYAQKNREYQSGIARLNAAAHLPAALAAW 81 
4BLU_A        82 INVVKHFNR-SGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEF---QK--DSRARVEKADGFQQLKAKLPPV 155
WP_012030600  82 RNDLRLWLE-SE--NVYCGSPWLAAHLLGEHDTLQACELHPNDAPALQHII---RSirPRRSFVFQKDGFVQLLASVPPP 155
WP_012071404  82 LDIVREMNP-TDTLEFYPGSPKIVDYYVRQKDKLHLCELHPNDYPILAALF---PN--KRKANVVKDNGFAAVKAMLPPP 155
WP_015260152  82 LAALRGLQPrPGELTRYPGSPQIARLRLRAQDRLIACELHPAAHAALRAGL---RV--DRRCHVHRRDAREAARALFPPE 156
WP_025330859  82 RNAVVSCLP-D-DTNLYCGSPWLAQALAREQDRLRLFELHPADAELLRNNMrniKQ--PNRAQVFCDDGFKGLLSMLPPP 157
WP_044618648  82 VALIRSVS--DQHEHLYPGSPMIAQAMLTAGQRMMLHELHPTDLHQLKQLM---EG--DRRIRVLGTDGYQGLISIVPPK 154
WP_002641074  82 VTHLLDNLD-D--ENLYGGSPWLAQSMLREADKLRLFELHPTDFQHLINNMreaKL--GRRGIIKQEDGFAGLIALLPPV 156
WP_108126198  82 LDALTKTGL-D-LTQMYPGSPLLAASLLNSDHRLQLFELHPSDFPILQQQF---RG--DRRVRCYQRDGFDGLLSAMPPK 154
WP_003785103  82 VDTLQRILP-A--EHLYAGSPWWAQSLLREADKLRLFELHPADFGHLTQNMreaKL--GRRGIIKQEDGFAGLLSLLPPI 156
WP_004142847  82 RDHMHAHQP---APDTYPGSAWIAARLLPAPGKLHLHELHPADHAALTENLrplRL--GRRLHTHRADGFAGLIALLPPA 156
4BLU_A       156 SRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEAT-GIRKILQIELAV-LPDSDRR 233
WP_012030600 156 QRRALIVIDPSYEQKSDYDAVCSVLSKALKKFAQGCYLIWSPCLLRTEAQDFPQQLAEViGGRGYLRAQLKV-RTE-SAL 233
WP_012071404 156 QKRGFVLMDPPYEMKKDYQYVVQALEDGYKRFPQGTYAIWYPVLNRQQANELLKSVKAT-NIRNVLLLELCI-RNTEQER 233
WP_015260152 157 PRRGMALLDPAYERPAEYTEVPQLTAEIRRRWNTGILLVWYPVLEDGRHPRLREALRAGhAGERIVFSELRL-TDPPRGP 235
WP_025330859 158 SRRAVVLIDPPYELKQDYQQLTDTLKTALKKFASGCYLIWYPCLSRGESLKLPQNLQKL-APDNFVQAELYVhAPRPDGF 236
WP_044618648 155 ERRALVLIDPPYEIKRDYDLVCSTLEKACKRFGSGVYLLWYPIVDRQRIDALHGKITRM-GVP-GLYAELSI-EADQSGY 231
WP_002641074 157 TRRAVVLIDPPYEQKQDYTRVVQTLKDVLKRFEQGCYMIWYPCLSRVESQELPEKLKKL-YPDNYLRAELYVhAPRANGL 235
WP_108126198 155 ERRALVLIDPPYEIKTDYDQVAETLATVTRKFPQLCALVWYPIAQRERSDTLVRKLKKL-SA-EWLVAELNV-APDSDDY 231
WP_003785103 157 TRRAMVLIDPPYEQKQDYARVVQTLKDALKRFEQGCYMVWYPCLSRAESVELPKKLKKL--SRNYVQAALHVhTPRADGF 234
WP_004142847 157 SRRAVILIDPPYEQKSDYQTTLDTLAAAYKRFPSGTYLIWYPCLPRDESRHFPAQLNQH-FGDNYLRAELHV-RAENGAH 234
4BLU_A       234 GMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTG-HATV------SWIV 278
WP_012030600 234 GMYGCEIHIINPPYLLAPVLQEAGNVLVQILAADKSA-QFQLwhrdaaQSAT 284
WP_012071404 234 GMAGSGMIIVNPPWTLEKEAKEFLPVLSKLLAEDNEA-GYQV------TWIT 278
WP_015260152 236 GLQGSGIAVIGAPWQLDLQARQVLFPAWRRLDPEGRGgLFQA------LALE 281
WP_025330859 237 GMHGSGMFIINPPYTLPGILEKVLPAMTRLLAQDDSA-HFVL------NSVI 281
WP_044618648 232 GMTGSGMIVLNPPYVLEQQLQTLLPWLASTLAGTSGS--YQL------KAF- 274
WP_002641074 236 GMHGSGMFVINPPYTLPEILHNTLPKLGKILMQDDGA-KVVL------EYKI 280
WP_108126198 232 GMTGSGMFVLNPPYLLAEQLRNCLPWLSQQLSAE--G-FFQL------DAQS 274
WP_003785103 235 GMHGSGIFIINPPYVLPDLLRDVLPELTRLLAQDSGA-KFEL------DYCI 279
WP_004142847 235 GMYGSGMYLINPPYTLPAELKTTLPALRDLCAESADS-RITL------DARI 279
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