5U0S


Conserved Protein Domain Family
Med31

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pfam05669: Med31 
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SOH1
The family consists of Saccharomyces cerevisiae SOH1 homologs. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes.
Statistics
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PSSM-Id: 428575
Aligned: 71 rows
Threshold Bit Score: 109.148
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5U0S_3        14 KSRFEIELEFVQMLSNPWYLNFLAQHkYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLHMLTLLKNPQ-FRNDISRADL 92  fission yeast
EEA07149       6 RKRFVLELEFVQCLSNPDYLQWLEKEgYYKDPSFIRYLKYLLYWCNPPYSSYLSYPHCLRLLKALQSPS-FRAKLSNDEA 84 
XP_001616018  32 RLRFECELEFVQSLSNIDYIKHLYENkYFSDKRFLNYLKYLNYWRTKPYIFYIHFPICLYVLEILNDGK-IDEYFSKESS 110
Q8IK88        35 KLRFECELEFLQSLCNIDYIKHLYENkYFNDYNFINYLKYLNYWRNKPYIFYVHFPICLYVLDILNNNN-TNIYFNHANS 113 Plasmodium falc...
EOB12316       3 NLRFEQELEFVQLLCNPDYIRWLFDEgYFDNDNFKRFLEYLNYWKTDEYKIFLTYPTCLNILDILNRED-VKDILKDESF 81 
Q8SU76         3 gSRFERELEFVQLLCNPDYLRWLTREgHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLAVLEHLNSEN-INDMLSDENF 81  Encephalitozoon...
EJW03888      23 QIRFQKELEFLQLLCNPQYLQHLYNNnFFKNEDFIKFLEYLKYWKMEPYRNFIIYPYSLEILDLCLDTK-FIEELANEQT 101
ELA46636       2 lTKFEKELEFVQLLCNPYYLQYLYQKgYFEDSEFRRFLRYLEYWKEKPYSNFLIYPQSLIILDALNNNEeFINKLDDEKI 81 
EGG08607      25 QTRFEEDLEFVQSLANPHFVQELTLKgILASEPMVNYLNYLKYFHDPQYAVFIRYPNCLFILDLLNKSEkFRTVIESQES 104
EDO07806      27 QMRFEAELEFVQCLGNPHYLHFLATRgYFEDRRFRAYISYLQYFRLPQYIQYVKYPYCIRILELLLDDS-FVQSLSNQMA 105
5U0S_3        93 SKQVNDEIYYEWLGKG 108 fission yeast
EEA07149      85 IQTIRDQQSFQWVSIQ 100
XP_001616018 111 FNNFVYYLKLHWLFYS 126
Q8IK88       114 FQNFIYYLKLHWLYFs 129 Plasmodium falciparum 3D7
EOB12316      82 YVKLGSEQYYLWKDRK 97 
Q8SU76        82 FLALGEQQYFIWLNKH 97  Encephalitozoon cuniculi GB-M1
EJW03888     102 YMILNEQIFNLWNns- 116
ELA46636      82 LEFVEEQLRFYWLHKN 97 
EGG08607     105 AQFLSDKLIQNWIt-- 118
EDO07806     106 IDAIEHQLMAHWICFK 121
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