2BYK,2BYM


Conserved Protein Domain Family
HFD_CHRAC1-like

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cd22924: HFD_CHRAC1-like 
histone-fold domain found in chromatin accessibility complex protein 1 (CHRAC-1) and similar proteins
CHRAC-1, also called chromatin accessibility complex 15 kDa protein, or CHRAC-15, or DNA polymerase epsilon subunit p15, forms a complex with DNA polymerase epsilon subunit POLE3 and binds naked DNA, which is then incorporated into chromatin, aided by the nucleosome remodeling activity of ISWI/SNF2H and ACF1. Together with POLE3, ACF1 and ISWI/SNF2H proteins, CHRAC-1 forms the ISWI chromatin-remodeling complex, CHRAC. This subfamily also includes Drosophila melanogaster chromatin accessibility complex 16kD protein (CHRAC-16), which is a histone-like protein that promotes nucleosome sliding of ATP-dependent nucleosome remodeling complexes. It is part of the CHRAC, composed of CHRAC-14, CHRAC-16, ACF and ISWI, which uses energy/ATP to increase the general accessibility of DNA in chromatin. It forms a heterodimer with CHRAC-14, binds DNA, and facilitates nucleosome sliding by ACF. It is required for oogenesis.
Statistics
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PSSM-Id: 467049
Aligned: 36 rows
Threshold Bit Score: 84.5307
Created: 3-Mar-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 32 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:2BYK; Drosophila melanogaster CHRAC-16 forms a heterodimer with CHRAC-14, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #  #  ### ### ### ########  #         #######  #        #  ##  #
2BYK_A        20 LPLSRVRTIMKSSMDTG--LITNEVLFLMTKCTELFVRHLAGAAYTEefg--qrPGEALKYEHLSQVVNKNKNLEFLLQI 95  fruit fly
RWS17777      14 LPLTRVSTIMRSSPHVR--DVSEDATVLAAKGAEMFLAFLASKAYEKs-----dDKTHLDYKHIADAVERDSQLAFLKDI 86  Dinothrombium t...
XP_018331096   4 LPMSRVKTIMRSSADVE--SVHKEAVLSLAKATEGFLKGLSNEVFRSs-----rPAHTITYTHVSDVVHDCEKYEFLREI 76  emerald ash borer
KPM02890      45 VPISRVNAIMRSCPNLT--TVKNDAVALISKATESFLQDLIRNVYHHs-----eNKSRLTYDNLADYIESSEYDFLKEII 117 Sarcoptes scabiei
KAA8491861    12 LPQSRVRDVIRLDADMEglSVRRDALLTVSKAAELFIELLVQEAMNGtq----gSVKKIEYKHIAEAVHGIPAFAFLQEM 87  Porphyridium pu...
VBB27020      43 LPLARVKTIMQSGGEQV--PISSEGLFAMTKAAELFICKLAKESYESn-----gKPKCIEYSHLADYIQDNDKLEFLHVI 115 Acanthocheilone...
VDO28661      26 LPLSRIKTIIGTVPDGL--QLSPEALFCVAKGAELFMEHLVKNVAKQ-------YGEHIDYDEVAEYVLENDELEYLHDF 96  Haemonchus placei
XP_005702820  18 LPQSRVKKIMKLDEDSL--LVREETVAVVTKATELFVDYLVKESIKD-------NKDKLSYKALSETVHSVPALHFLREV 88  Galdieria sulph...
XP_005538329  30 LPLSRVRKIIKYDSEVS--TVREDAVTAIARATELFLEYFLEETYREatsrtrgRVKRLNYNDFSKTVQEIEALHFLAEL 107 Cyanidioschyzon...
CEP02489      83 LPMTRVRKVIKSTPSVN--SLAGDAGAVIAKSTEFMIARLAQAGFRRav---teGRRTIQYKDLADVVRDDERWEFLLDI 157 Plasmodiophora ...
Feature 1         
2BYK_A        96 V 96  fruit fly
RWS17777      87 I 87  Dinothrombium tinctorium
XP_018331096  77 I 77  emerald ash borer
KPM02890     118 P 118 Sarcoptes scabiei
KAA8491861    88 V 88  Porphyridium purpureum
VBB27020     116 Y 116 Acanthocheilonema viteae
VDO28661      97 F 97  Haemonchus placei
XP_005702820  89 V 89  Galdieria sulphuraria
XP_005538329 108 I 108 Cyanidioschyzon merolae strain 10D
CEP02489     158 V 158 Plasmodiophora brassicae

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