Conserved Protein Domain Family
PBP2_ModA3_like

?
cd13517: PBP2_ModA3_like 
Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily.
This subfamily contains molybdate binding protein-like (ModA3) domain of an ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. ModA transporters import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arrangted around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate where the central metal atom is in a hexacoordinate configuration. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270235
Aligned: 25 rows
Threshold Bit Score: 236.736
Created: 29-Jul-2009
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_002601456  22 DLIVFSGtgliKPMEEMRKNYetq-kkIQVDIHYGsSGEIFGMIAAgqPCDVLIPGaaKYTQDALKngwviqdTIRNLIL 100 Desulfobacteriu...
ZP_01311611   21 ELLVFSGagmrVPMQELGKKFsde-tgIDVAFDFDgSGRLGSKMLLgvKPDLFIPGsnKWAQRLKKegl--aeECVAIAY 97  Desulfuromonas ...
ZP_01854390   38 SLVMYCAagikPPVAAAAAQFaeeefgIPVHLQYGgSGTLLSNLQVakKGDLYLAAdtSYIEIAREkgl--ldEAISVAR 115 Planctomyces ma...
YP_357151     25 SLLVFAGagmrAALDEVAMQFeae-sgIRVIHDYEgSGRLASKILAgqKPDVFIPGaeKWAKLLKEkgf--vkTYFGLAQ 101 Pelobacter carb...
YP_001211391  35 EISVFAGsaskPPLEELAAGFtak-tgVKVNITFGgSGSVLSQMKLskQGDIYLPGssDFMELAKKegvvaadTEKILVY 113 Pelotomaculum t...
NP_661566     28 RLLIYAGaaskPPTEEAAKAYeek-tgVKVDVIFGgSGYVLSQMKLakQGDLYFPGssDYMDKAKRegdvfpeTEKVIVY 106 Chlorobium tepi...
YP_001355495  26 HLLIFAGsaskPATEEAAKAFekk-tgIHVDIIFGgSGFVLSQMQLtkQGDLYFPGssDYMEIAKKkglvdpkSEKIVVY 104 Nitratiruptor s...
EEW28111      28 ELLVYAGsanlPPLEKIIELYg-----KKVKAIYGgSGYVLTQAIIakKGDVYLPGsnDFMELAKEkgavyeeTEKILAY 102 Ferroglobus pla...
YP_001435924  34 TLLVFLPaagkRVWQELIPLFekr-ygVEVEAVYGsSGRLLQQAYVseRGDVLGSAtpPYMNKAVEyglvypeTVSYVAC 112 Ignicoccus hosp...
CAJ72798      30 RLLLFVGaaskPPTEEAVKLFekk-tgVRVEVVFGgSGYILSQMILakKGDIYFPGssDYMEKAKRegyvypeTERIVVY 108 Candidatus Kuen...
YP_002601456 101 HVPVIAVPKgnpsdirrLEDLARPGVKVAIGDpkapAIGRVAKKMLKNAglw---ekVQPNIKVYAPTVNQLLIYVALNQ 177 Desulfobacteriu...
ZP_01311611   98 HIPVIITPKgshk-vqsLSDLTLPSVKLALGDlkaaAIGRNNKRLFEKVgl----dpAAMNIVARGINVKQLVSWVETGS 172 Desulfuromonas ...
ZP_01854390  116 MHPVIMVKKgnpkkiqsIDDLLKADVTFALANpdaaSIGKLTKKKLTEAgkw---daVSRSARVFKPTVSEISSDVLLGA 192 Planctomyces ma...
YP_357151    102 HVPVILTPAnntk-vnsLQDFTKHDVRLVLGDpkacAIGRNGGCLLKKAgl----deSGLNVVSRGVTVKQLVRWIEFGN 176 Pelobacter carb...
YP_001211391 114 LLPAINVPKgnpagikqLADLAKPGVKVGIARpdtvCVGLYGAEVLEQAgla---dqVKKNIVTYVESCEKTANLVALKQ 190 Pelotomaculum t...
NP_661566    107 LVPAINVQKgnphnihtLKDLTKPGLRVAIANpegvCVGAYAVEIVEKNfspkelaaFKKNLVNYTGSCEKTATAISLKQ 186 Chlorobium tepi...
YP_001355495 105 LVPAINVPKgnpkhihsLKDLTKPGIKVAIANpqgvCVGAYAIEILEKNftpkqkkqFRKNLVGYTGSCAKTANAVVLQQ 184 Nitratiruptor s...
EEW28111     103 LIPVIVVRKdnpkkiskLEDLEKDGIRIAIANpntvCVGLYAVELFEYNgl-----dVKKNVVTLTKSCSDTASIIEAGA 177 Ferroglobus pla...
YP_001435924 113 MRPAILVPKdvn--vsgLDDLIKRGIRILMCDpegcAVGKFFKYALAKEglw---ekISKKVVGYTENFSKLIAALLVGK 187 Ignicoccus hosp...
CAJ72798     109 LVPAINVQKgnpkhikgLEDLAHPGIKVAIANpegvCVGAYAVEIIEKNftkkqkkdFKKNIVNYTESCAKTLTVVSLKQ 188 Candidatus Kuen...
YP_002601456 178 VDASLIWEDLTVwaegkgkIEVVPIEaky-nmIKTIPTAVCSkaqhmETAMDFNAYVASd-eGFQIWKKWGFK 248 Desulfobacterium autot...
ZP_01311611  173 VDASIVWAADAFqs---gqVETIAIPpdv-nqIDTIPFCRLKspghpVEANLFWQYMLVe--APAVFSRHGFK 239 Desulfuromonas acetoxi...
ZP_01854390  193 VDAAIVWDATVNqhp--ekASMVDVPefs-dtIKNVTVGVLNssdkpQQALMFARYLQApekGQKQFAEKGYE 262 Planctomyces maris DSM...
YP_357151    177 GDATIAWHADGFhn---dkVRIVPIPeev-ncVDIVPVCTMTdashpEAAARYLEYLAAh--GSKVFAKFGFK 243 Pelobacter carbinolicu...
YP_001211391 191 VDAVMGWDVFASwdp--ekIETIYLPpekvkrIGYIPVAVSSyaarkDLALQFIDYLTSe-eGKKVFKKWGYL 260 Pelotomaculum thermopr...
NP_661566    187 ADAVIGWRVFQYwdp--erIETIKLPkeliprVGYIPIAVSKfthdrAAAQAFIDFLTGp-eGQKIFAKYHYF 256 Chlorobium tepidum TLS
YP_001355495 185 ADAVIGWRVFHYwnp--ekIETIPLKpseivrIGYIPIAISKfsrhpKLAQQFIDFLTSq-eGQKIFAKYHYF 254 Nitratiruptor sp. SB155-2
EEW28111     178 VDAVIGWDVFDDws---pnLKVIFPKpeqiprVAYIPIAVMKftknfEKSLSFLNFVYS---NKRIYKEMGYL 244 Ferroglobus placidus D...
YP_001435924 188 AEAALGWDVAARwyp--gkLKAVPLDlag-pyEPCIEVAVLKstknlGLAKLFVKFITSk-eALEKCREYGYS 256 Ignicoccus hospitalis ...
CAJ72798     189 VDAVIGWSVFQHwnp--etVETIPLKsdevvrVGYIPIAVSTftknkVLAEQFVDFILSe-eVRSIFKEYQYF 258 Candidatus Kuenenia st...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap