1JC5,3GM5,3HDP,3RMU,3OA4


Conserved Protein Domain Family
MMCE

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cd07249: MMCE 
Click on image for an interactive view with Cn3D
Methylmalonyl-CoA epimerase (MMCE)
MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Statistics
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PSSM-Id: 319912
Aligned: 40 rows
Threshold Bit Score: 111.514
Created: 13-Feb-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:[HQ] [QDE] [HQ] [EQ]Click to see conserved feature residue pattern help
Evidence:
  • Structure:3HDP_A; Clostridium acetobutylicum MMCE bound to Ni(II)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #                                                                     #       
1JC5_A        10 IDHVAYACPDADEASKYYQEt-FGWHELHREEnp----------------eQGVVEIMMApaakltehMTQVQVMAPLND 72  Propionibacteri...
NP_768890      8 VRQNGYVVRDIHAAMKHWIEv-MGVGPWYYMDrvrtdwfr----hrgqdsaVEMSIALANs------gDLQIELIQQRND 76  Bradyrhizobium ...
ADB52380       7 VHHICIAVHDIERASEYYES--VGIGPWQDYGslaqysdle-vpdvdgffaSVYRTAQVG--------DLQLQLVQPGAG 75  Conexibacter wo...
ADB50696       8 ADQIGIVVHDLDRALARYERa-LGGGPWRIWTygprnvprl--tyrgadaaFEMRVALSSs-------VPQIELIEAISG 77  Conexibacter wo...
YP_001703123  16 VTQIAWVTDDLDATEAMLSAv-FGVKKWTRIPdvhfgpetctyrgapadftATIALSYLD--------DMQLELILPVSG 86  Mycobacterium a...
YP_889033      9 ICQIGYVVADLDDAISRWLQ--MGVGPWFVIRgmtqrvr-----frgepceVTLSLALSNs------gDLQIELIQQHGD 75  Mycobacterium s...
NP_386407     11 VFHYGFVVPNMDRALKTWTQ--QGARLVVPPAid---------------paQNVSCALLIyl-----dSVPIELVAPLRD 68  Sinorhizobium m...
NP_831610      5 IDHIGIAVRDIDSTIRFYENvlLGTLIDRYVSea---------------pgVESEVAILEv------dGDRIELLAPTNN 63  Bacillus cereus...
3HDP_A         8 VHHIGYAVKNIDSALKKFKR--LGYVEESEVVrd---------------evRKVYIQFVIn------gGYRVELVAPDGE 64  Clostridium ace...
YP_098108      7 FHHIGIAVFDIDDTAQYYID--AGYQKTETVIdt----------------iQNVKICFLTke-----gMPMLELLAPVDE 63  Bacteroides fra...
Feature 1                          #                                                   #   
1JC5_A        73 ESTVakwlakhngRAGLHHMAWRVDDIDAVSATLRERGVQLLydepk-lgtgGNRINFMHPKsg-kGVLIELTQ 144 Propionibacterium fre...
NP_768890     77 APSLykef-ldagHEGLQHMSYWSHDYQALYDKALALGYRIGhegq--iggdKGRFAYFDTQah-pGTVIEISD 146 Bradyrhizobium japoni...
ADB52380      76 SPQRrfl---dehGEGIFHIGFEVGDIDESEAQAAALRMEVLmrgr---rpdGSGFAYFDTAdragGVVLELRS 143 Conexibacter woesei D...
ADB50696      78 PSIYtewl--drhGEGLHHLGMFEEDVDGGIARMAAQGFDLMqsgrgygrdgDGGFLYFDTAae-lGVILELIE 148 Conexibacter woesei D...
YP_001703123  87 TSIYtefl--ernSAGLHHVCVEPPDLDVALDHATSQGMEVVqdgv---mpgGMRFAYLSAP----AAALPYME 151 Mycobacterium abscess...
YP_889033     76 THSVftef-laatGGGFHQLAYWARDFDAAVADLEDAGWPEVwsgg---eaeGVRFAYYEPPa--gATVIEIME 143 Mycobacterium smegmat...
NP_386407     69 GPNPvasr--lakGGGLDHVCLFSDNLEHDVAKLEADGGMVVvapcy-gavfKRRLAFVVTRa---GLVVELMT 136 Sinorhizobium melilot...
NP_831610     64 TTSPiarf-ikqkGKGVHHVAYRVDDLDVALEELKEQGIRTLehtlr-inkhGRRLIYLNPAdt-eGTIIEYCD 134 Bacillus cereus ATCC ...
3HDP_A        65 DSPInkt---ikkGSTPYHICYEVEDIQKSIEEMSQIGYTLFkkaeiapaidNRKVAFLFSTd---IGLIELLE 132 Clostridium acetobuty...
YP_098108     64 NSPVnrtl--dkmGVTPYHCCYSVDDMEGAIARLKKIKFVPLikaveacaigGRRVCFLFNKk---VGLIELVE 132 Bacteroides fragilis ...

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