2QPQ,2DVZ,2F5X


Conserved Protein Domain Family
PBP2_Bug_TTT

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cd07012: PBP2_Bug_TTT 
Click on image for an interactive view with Cn3D
Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold.
The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.
Statistics
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PSSM-Id: 270234
Aligned: 513 rows
Threshold Bit Score: 167.261
Created: 8-Jan-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:2QPQ; Bordetella pertussis Bug27 with bound citric acid, contacts at 4A.
  • Structure:2DVZ; Bordetella pertussis BugE with bound glutamic acid, contacts at 4A.
  • Structure:2F5X; Bordetella pertussis bugD with bound aspartic acid, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #   ###                                                              
2QPQ_A         5 FPNKPLDIIVTFppGGGTDMLARLIGNYLte--sLGQTAVVENRPGASGNVGARLVADra-pDGYSLLMVn-sSFAVNPG 80  Bordetella pert...
NP_843431     29 VNIDEVEIVAPNvqGAGWDLTARAMQKTLteekiFTKPITVTNKVGGSGDVGWKYTKQk---GGHVLAINs-sLLITNNL 104 Bacillus anthra...
YP_076057     51 KPEKAVTLIVPYsaGGSTDVLARVVEKIWpk--yVDQPLTVVNQPGGSGWVGREAVAKaa-pDGYTLMIGygsGEDLIAP 127 Symbiobacterium...
YP_001069161  31 YPSGPVTMTAGAnpGSGFDITIRAVVEALqkerlVDVPLPVQNRPGGIGAQFLATMVEqyrgKDDQVSVTs-lSMMMNEL 109 Mycobacterium s...
YP_001352981  30 TPQKNVEIVVGSvpGGSNDKTARAIEQTVvrkklLSTTMTVVNKPGGGGNLQLNYLVQrk-gDAHYLMVTt-pTLLTNQL 107 Janthinobacteri...
YP_001895847  33 QPRRPIEIVVPSapGGGLDLVARTLQSVIqqeklSAKPVTVINRPGGGGTVSIAYINShe-aDGHFVTVQa-lPLITNRI 110 Burkholderia ph...
EDZ60642      26 IAIDKLHFVIGGgaGGGWDGTARGTGEALtk-agMLKSASFENMSGGGGGKALAFMINt--kPANTVLVQs-tPLVLRSI 101 Candidatus Pela...
CAV18453      25 ADVEKIHFLIPGgaGGGWDMTARGTGDVLvk-sdIVENVSFQNLSGGGGGKAIAHLIEtaqrQEDTLMVNs-tPIVVRSL 102 Vibrio splendid...
O34439        27 LPDGPIEIVVPAepSGGWDVTAQAIQSVLrqkqiVKDDVHIVYKSGGGGEKGWKYVNKs---SKQTISMTs-sLILSNDL 102 Bacillus subtil...
YP_002521169  25 EPSRVVEIIVGAspGGGFDRTARAMERVLee-gfVSQPITVTNQPGAGGAVGLASMNRhp-gDMHYISITs-pNILTDEL 101 Rhodobacter sph...
Feature 1                                                                           ##           
2QPQ_A        81 Vfrnlp-----fdpkKDFAAVINVaYVPSVFVVPagsk-yktLGELMAAAKqtntqVTYGSCgn-gtPQHLAGELLNVS- 152 Bordetella pert...
NP_843431    105 Lghsk-------ltyKDFTPLATLaSDWEVVVVSkdst-idnANELMEQLKqnkknFNIGVApglgnDDHLSFVQVSKAf 176 Bacillus anthra...
YP_076057    128 Qlreap-----fdpiNDFQPIALLsNHAILFATStesg-yetMEQLLEAAKsa--eVTAALSgv-gnLMDITVRAVAKA- 197 Symbiobacterium...
YP_001069161 110 Rglse-------ygyTDVTMIARLmTEYYVVVTGag----spYKNLTDVMAavkadPAVPIGaa--tDDQAPFDLLVAAa 176 Mycobacterium s...
YP_001352981 108 Tgnsa-------lgyNDFTPIASVvDDYVVYVVNadsp-iktGKDLVDRLKkdprsITIGFSttlgsHNHIAAGLLAKTv 179 Janthinobacteri...
YP_001895847 111 Tglst-------vgiDDVTPLAVFvTEQVVFSVPgnsp-iksGSDLVQMLKkdptsVTLGVSsspggQSHDAAALVMKGa 182 Burkholderia ph...
EDZ60642     102 TrhkgyvsgsgtlsyKDVVPIAGViGDYGAIAVAknsp-yknFKDVVDAYKkdpssIKMAGGsvrgsMDHLIGALAFQAa 180 Candidatus Pela...
CAV18453     103 Tgifp-------qsfRDLTPVAATiADYGAIVASadskyntwEDVVKEFESnp-rkVKIAGGsargsMDHLVVAAAFKGe 174 Vibrio splendid...
O34439       103 Lgqsk-------lkmSDFTPLAILsKEWQTVALPkgsa-ltnGKDVLNEINmhpgkVRIGFApgfgnDDQLSFVRAADMy 174 Bacillus subtil...
YP_002521169 102 Rgtsp-------ltfETLTPLATLvSEYLCFAVNaegp-lktAEDLVGALKerpgeMRFGFAttpgnHNHVAFAQLAQAv 173 Rhodobacter sph...
Feature 1                                        #                                             # 
2QPQ_A       153 --AKTHMVHVPYKGcgPALNDVLGSqiGLAVVTasSAIPFIkagKLQALAVTskERSAl-LPEVPTVAEqgvaGYELNQW 229 Bordetella pert...
NP_843431    177 giNPAELQFFVYENkeKIINALTNKqiSAATMTlsEAEKQYkagKIKILAVSapKRLDr-LLQIPTWKEqg-iNVIFQHW 254 Bacillus anthra...
YP_076057    198 --AGGEITGVPFAGggPATTAMVGNqvDFGPGHqsELMPHVkggRLRILAVAspERESm-LADVPTLKElgidYVNAGSL 274 Symbiobacterium...
YP_001069161 177 ggDPSTINYVPFEGggDQSTALRNGeiPVAITGisEVVDQVksgEFTALGVLseERLP--NLDVPTAREqg-lDVTLSNW 253 Mycobacterium s...
YP_001352981 180 gvDPKGLKVVAFKGggEALTTLLGGhiDLVTTAagNVAPHVesgKLRVVAVAsdQRLPgvMAQVPTWKEqg-vNLVWGNW 258 Janthinobacteri...
YP_001895847 183 gqDPKKMKVVFFDSggEALTALMGGhvTASATPagVVLGPSksgSVRMIAIPggARQGgeLANVPTWKEqg-iNVDFTTW 261 Burkholderia ph...
EDZ60642     181 gaNPNDVAYIPYDAggKALAGLLSGetQIISTGlgELMGARd--QVTIIGITapSRVSd-APDAPTLKEqg-yDVQFVNW 256 Candidatus Pela...
CAV18453     175 gfDAKKVRYIAYDAggKAMAALLSGetQLLSTGlgEVLEMSksgQVKILAVTapKRLDa-APNIPTLTEyg-nETVFANW 252 Vibrio splendid...
O34439       175 giDPFDIQFSQYDSseQLIQALIRHeiEAASMTlsEAKPYErngDITLAAVTsdKRLPg-FPNVPTWKEqg-iPFVFSHW 252 Bacillus subtil...
YP_002521169 174 gfDVMKPKTVVFKGasEAVTALLGQhvDFSIAPaaSFAEYVrsgDLNCLAVSapERLGgaMAEVPTWTElg-yPVVYGPF 252 Rhodobacter sph...
Feature 1                                                                            
2QPQ_A       230 HGLLVPGATPmAVRQKLYDGIAKVMQrDDVQKKLADl-GYSTAsd-gPEVFQKMVETDIDRFSALTKQ 295 Bordetella pertussis
NP_843431    255 KGIMGPKNMTeEEVAYWDGVIKRMVEsDSWKGILREr-GWNSYyk-dSRETRGFLEESSGWYGGMVGG 320 Bacillus anthracis str. Ames
YP_076057    275 KGIAAPAGLPeEILAYYEDLFAKITSdPEFQQAMAD--VYQPVnyknPEEFGAMIREYYEMYSRLIKE 340 Symbiobacterium thermophilu...
YP_001069161 254 RGLYGPPDMPqFAVAYWQTALGEMVQ-SPTWQQIAArsHFTTTfm-tGDEFQTFLAETQEDVKTALEE 319 Mycobacterium sp. JLS
YP_001352981 259 RTIMGPKGLTqAQVNSWVGVLQKVVDsPEWKKDLELn-YWSDSfv-tGDALKQRLAQDYASMKVILTD 324 Janthinobacterium sp. Marse...
YP_001895847 262 RVLVGPKNMTpAEIAWWDNVLQKATAsPEWAVAVKRn-LWTADyk-nSTQTRAFLQGERNRLTPLLGE 327 Burkholderia phytofirmans PsJN
EDZ60642     257 RGFFGPPGMSsADKNAIAKMLGDVQKtSEWETVRARn-AWVNIyn-pGDKFVSFLEKQTEEMTALMKK 322 Candidatus Pelagibacter sp....
CAV18453     253 RGFFAAPGTSqAKIDEWNVALDKMYKtDEWQVVRDRn-GWIDNyk-aDKDFYAFLEDQEKQMGDLMRE 318 Vibrio splendidus LGP32
O34439       253 RGILGPKNMSeEEISYWDQALKKVTSsPEWKRKINEq-DWESFyl-nSRETKRFLEEQSAFYQSIMTG 318 Bacillus subtilis subsp. su...
YP_002521169 253 RGVIGPQDMQpDQIAFWEEALTRMTGtEAWKQEVEDn-YWTETfk-gHDETLEFLRSERDLLKVSLTE 318 Rhodobacter sphaeroides KD131

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