Conserved Protein Domain Family
SLC6sbd_Tyt1-Like

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cd10336: SLC6sbd_Tyt1-Like 
solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain
SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.
Statistics
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PSSM-Id: 271367
Aligned: 274 rows
Threshold Bit Score: 257.369
Created: 3-Dec-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:Na binding site 2 [ion binding site]
Evidence:
  • Comment:based on Aquifex aeolicus LeuT (SLC6) with structure
  • Comment:One of two Na+ binding sites in Aquifex aeolicus LeuT. It binds the Na+ ion designated Na2, and appears conserved in Vibrio parahaemolyticus vSGLT and other SLC5 proteins

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #  #                                                              
YP_001514126  11 DQWGSKLGFIMAAAGSAVGLGNLWKFPYLAGSNGGGAFVFVYLVLILLVGFTMMLAEIVIGRNTQlssvga--------y 82  Alkaliphilus or...
ADC71256       8 QRWTHGYAFVLAATASAVGLGNIWKFPYILGQNGGGAFLAVYLLTIALIGIPIMMAEVMIGRRGRrspgyaala--vare 85  Thioalkalivibri...
ADN76078       9 GRWSSRLTYILAATGAAVGLGNIWKFPYIMGENGGGAFVLVYLLCILFIGIPIMMSEVIIGKFGRqtparsavl--msea 86  Ferrimonas bale...
EGN75789       9 NRWSSNFSFVLAATAAAVGLGNIWKFPYIMGENGGGAFVLLYLLFIFLIGVPVLMAEVLIGRRGRnspgyaaak--lare 86  Idiomarina sp. ...
YP_943637      9 NRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVPVMMAEVVIGKRGRstpanamth--vate 86  Psychromonas in...
YP_001423694  19 TRWTSRTSFIFATAAAAIGLGNIWRFPYLAGQNGGGVFVLLYLLFVILLGVPLMTSEVLLGRIGRgnpalalqn--vasi 96  Coxiella burnet...
BAJ04292       9 NNWSSRLTFLLASIGFSVGLGNIWRFPYITGENGGGAFVLIYLACALCIGVPLVMSEWAIGRQTKqaasaatsfkllatd 88  Shewanella viol...
AAS73122       9 GTWIGKWTFVLAATGSAVGLGNIWGFPYKAGTEGGGAFVLIYLLCIVLIGLPIMLSEILIGRRSGnspinsmkk--said 86  uncultured mari...
YP_572461      6 ERWGSRRAFILAVTGAAVGLGNIWRFPYMTGENGGAAFLLLYVAFVMVLGLPIMMAEILVGRAGRrgpmqslah--larh 83  Chromohalobacte...
NP_821058     13 ERWSSKLAFILAATGAAVGLGNIWRFPYMAGMYGGSAFLLIYLIFVLIIGLPIMIAEILIGRRSRknpvdalit--laqe 90  Coxiella burnet...
Feature 1                                                                                        
YP_001514126  83 kklnAKWGWLGGLGVLAGFLILSFYSVVGGWTISYIVKAITGAfntadldl------lggmfgglIAGTLEPLVYHGIFM 156 Alkaliphilus or...
ADC71256      86 arvrDAWQMVGWIGIIALFVIMTFYAVVTGWVFSYVPRAASGAfagvdape------viaifegvQTSLSGMLLWTTLVL 159 Thioalkalivibri...
ADN76078      87 sgggKGWAVVGWSGVLAGYLILSFYVVIAGWALAYTWYGFNGVfegrdpaq------igelftglNASPGPLMAWSAVII 160 Ferrimonas bale...
EGN75789      87 sgvsSAWQITGWMGLSAGFIILTFYAVIAGWALSYVIKSVSGTfvgatpet------vsatfgamVSSAPELLLFTTLLI 160 Idiomarina sp. ...
YP_943637     87 sghsSHWSIIGSIGVLAGFLILSFYAVIAGWAAAYVFFAGAGEfsaaaadpatnadvigalftdlITSVPQLLIWTTLTI 166 Psychromonas in...
YP_001423694  97 ikrsRHWRILGGMTIAAGYLILTYYVVIAGWVLDYFVRGLLGQfhntthss------mianfkalQANPWQMIVTDTFIV 170 Coxiella burnet...
BAJ04292      89 nnlsPQWSKVGAMAILAVFMMMLTYTVITGWTLDYFTMAIAGEfvginsqe------skqhfeslMASPVRLIFWHTLVV 162 Shewanella viol...
AAS73122      87 sdvsSAWQGVGWIGISAGILILSFYSVIAGICLKYIFVSASSNdldtag-----------qflsiVNSPKELMLWHTIFM 155 uncultured mari...
YP_572461     84 agvsPHWRWLGLFGAITVFFILSFYSVVSGWSIEYLIESVNGNfsgrtpae------igasfeafLADPLRMTFNHTLFM 157 Chromohalobacte...
NP_821058     91 snhsRKWGLLGWLGALALLLILSFYSVVAGWNVAYLIKSFSNEfyqlnpaq------itnmwksfLANPWHLLGWHSIFM 164 Coxiella burnet...
Feature 1                                                                                        
YP_001514126 157 IITLLIVvgGVSGGIEKSTKIMMPALFVMMIMVMIRSLTLPGAMEGVKFFLVPDfskltpsVLLAALGQVFFSLSLGMGC 236 Alkaliphilus or...
ADC71256     160 AATFAIValGLRNGLERGVALVMPLLFGLLLAAMVGGLWVGDAETALDFMFRPDfsaldrhSLLIAVGHAFFTMTLAAGV 239 Thioalkalivibri...
ADN76078     161 LGTVLVVgkGVRAGLERAVNWMMPALLVLLIVMVIYAARRGDFMAAFDFMFNADfsalswnGVLIALGHSFFTLSLASGI 240 Ferrimonas bale...
EGN75789     161 VSTVVVVgkGFKNGLERAVTYLMPLLLGLLVIIALYAAHIGDFATAFKFMFYPNfsalttqGALIALGHAFFTLSLASGV 240 Idiomarina sp. ...
YP_943637    167 VAVVYVIskGVKEGLETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDfsqltieGALVALGHAFFTLSLAMGI 246 Psychromonas in...
YP_001423694 171 GATMAVIvlGIKRGLERTVRFMFPALIILMLILVAYGMTTGYFHHALVFLFKPDfhrvtarIALLALGQAFFSLNIAMGI 250 Coxiella burnet...
BAJ04292     163 IIIIMVNirGVQAGIEKAVTVLMPALFICLIAMVCYAAMVGDMSATVDFLLKPDfsqvsgqTFLLALGQAFFSVGIAMAV 242 Shewanella viol...
AAS73122     156 GLTMFIVsaGVKKGIGRMVKILMPMLGLLLIFMVVYGIINGAFKEALSFLFKPDftkitsdTFLVAMGQAFFSLSLGMGS 235 uncultured mari...
YP_572461    158 LLTMSVVaaGISGGLERLNNLLMPLLYILLVVLAGYAVTTDGFGTAMTWLFAPDldaitlsVVLNAMGHAFFTLAVGACA 237 Chromohalobacte...
NP_821058    165 FLTMVVVakGVKGGLEKATKFMMPALYVILFILVIYAFSYGNFNKGFHFLFDFNhskittsVVIAALGHAFFTLALGAGA 244 Coxiella burnet...
Feature 1                                                                                        
YP_001514126 237 MITYGSYLGKdEDIVQSSMIIPALDTCIALLAGFTILPAVFAFGF-DPSAGPGLLFVTLPAVFSkmplGTLFAVVFFVLV 315 Alkaliphilus or...
ADC71256     240 LMMFGAYLPRkTSIAGTAIGVAIADTVIALIAGVAIFPVVFGYGL-DPAAGPGLMFEALPLALSaipaGVLLTTLFFVTL 318 Thioalkalivibri...
ADN76078     241 MTMYGAYLPEqTSVVKTSIWIALMDTMVAMLAGLAIYPIVFANGL-EPGAGPGLIFQTLPIAFGsmplGQLFGGLFFLML 319 Ferrimonas bale...
EGN75789     241 MIIYGAYLPKgASIVRTSIWIALADTLVALIAGLAIFPIVFGFGL-TPGEGPGLIFQTLPLAFAnmpfTNLISTLFFVML 319 Idiomarina sp. ...
YP_943637    247 MMIYGAYLPKgVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGL-EPSAGPGLLFQSLPLAFGsmpfGDFVGVLFFVMV 325 Psychromonas in...
YP_001423694 251 IIMFGAYLPDdIPIVSSVIAVCLADTAIALLAGLVIFPVVFANHL-TPDSGPSLIFQTLPLAFSqipfGNVFGALFFLLL 329 Coxiella burnet...
BAJ04292     243 MVTYGSYLDPkTSIASNAIIVVVADTLVAMLAGFAIFPLVFSNGL-TPDTGTGLVFQVLPIALSdlpgGQIFSGIFFLLL 321 Shewanella viol...
AAS73122     236 IMAYGAYMSKdQNIASTSVSVGALDTLVAIMAGLAVFPIIFAIQGlEASGGPGLVFISLQTAFNtmdfGNIIGPIFFILL 315 uncultured mari...
YP_572461    238 LMAYGAYMPDhQSLPRAVMAVAVLDITVALLAGIAIFSVVFSQGM-DPGEGPGLMFVTLPIAFSdlpgGSLWLGVFFLLL 316 Chromohalobacte...
NP_821058    245 MAMYGAYVPRnVNLGKTVLIVASLDVLVAILSGLAIFPIVFAYHL-PPNSGPGLMYVTLPIILAhlssGWFIGGLCFLLL 323 Coxiella burnet...
Feature 1          #  ##                                                                         
YP_001514126 316 LFAALTSSISLLEVTVSYMvdefkwdrkkATYIMSGIIFIVGVAASLSmgpwsh------ieligGRNIFDTLGFIAENI 389 Alkaliphilus or...
ADC71256     319 SLAAFSTMIANVQVFVHLLhdhfgisnlqAALGSALGIWGFSLITIFSftgagwtqidlvvlgreLPTLYHLLEHTAINI 398 Thioalkalivibri...
ADN76078     320 VVAAFTSAIALIESSVAWLvekrgmsrmgAAFTAGFGIWSLSLLTVFSvtgapwat--vslwsdiSITLFDLLDYITANI 397 Ferrimonas bale...
EGN75789     320 VLAAFTSAIAMIEASVAFAeeklrisrwkAAITSGAVLWVLSLGTVFSlsgagwaqldwnffgkeLDSIFAAIDHLASNI 399 Idiomarina sp. ...
YP_943637    326 VFAAFTSAIALLESPTAYLverqnvsrtkAAIIAGAAVWILSLCTIYSfagaewt----klsfgmGGDIFEFLDYLTANI 401 Psychromonas in...
YP_001423694 330 LFAAFTSTISLLEPAVAWLienhhfsrnkAVALLGFICWVLSFGTILSfshap-------hfnhlGFTFFQGIDFLTSDI 402 Coxiella burnet...
BAJ04292     322 IAAAFTSCIGNFEPIIAWTsdrfklgrakATLLSGLTIWLLGIGSVLSlnqlsgyhplallpfleNKTIFESLDYISASI 401 Shewanella viol...
AAS73122     316 SVAALSSSISILEPGVAYLaeegylsrtkSAIIISITCWLIGIGTAFGfdq------------dgNNFFQANVELISVNI 383 uncultured mari...
YP_572461    317 LLATWTSSINLAEPMVAIFtdagl-krgkATALIGTLVWMVGLLSVFSfstlse------vtwvaGMNFFELVTTVPPEI 389 Chromohalobacte...
NP_821058    324 LFAAWTSSINLAEPLVVILterlglkrtyAAIIIGLTAWFIGIGSVLSfnrwq-------siklhGLTIFDISTNLPTDI 396 Coxiella burnet...
Feature 1                                                                    
YP_001514126 390 LLPLGGMLMCIFIGWVWGLENAikeasnegklafklapVWGFLVKYIAPLAVLIVFLQSS 449 Alkaliphilus oremlandii OhILAs
ADC71256     399 LLTVSGLLIALFAGWILPVRITrdelgr----pplafhIWRLILRYIAPIVLLTLFWQNS 454 Thioalkalivibrio sp. K90mix
ADN76078     398 MLPLGGLMIAIFTGYRVRKEITcreigs----vksiyaIWRISVRYVAPIAITLVFLQLI 453 Ferrimonas balearica DSM 9799
EGN75789     400 LLPLGGFMAAVFTGWVMKRHFTeeelnm----skkgyaVWRFCVRYLAPIAIICIFLQLL 455 Idiomarina sp. A28L
YP_943637    402 LLPLGGILISIFAGWVIKPEILkeefnl----sdkyfaIVLTLLRYVAPIGILLVFLNAI 457 Psychromonas ingrahamii 37
YP_001423694 403 MLPLSGLLIAVFSGWLLPTTLIqktlgwn--phnfwfwCWRWSKRYFAPIAIGLILLMSL 460 Coxiella burnetii Dugway 5J108-111
BAJ04292     402 LLPLGGLLTAIFVGWRLPPATMqaalgl----nkssfrVWQLLIRYLIPVAITLVFLSGF 457 Shewanella violacea DSS12
AAS73122     384 MQPLGGMLIAIFIGWFMKESLIkdelgdi---nqaiyqIWRIFIKFVAPIGVGIVLISQL 440 uncultured marine gamma proteobacte...
YP_572461    390 FLPIGGLLIAIFAAWVMPASEAmralda----gpggfrLWRGVVRYVSIPLLVIVLLSAL 445 Chromohalobacter salexigens DSM 3043
NP_821058    397 ILPLGGLGFAIFAGWVMKKTITqkevp------seiysIWRFLVRYVAPLGILIVFISSI 450 Coxiella burnetii RSA 493

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