Conserved Protein Domain Family
uS7_plant

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cd15484: uS7_plant 
plant ribosomal protein S7
uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.
Statistics
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PSSM-Id: 271251
Aligned: 10 rows
Threshold Bit Score: 178.729
Created: 9-Jun-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:rRNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Ribosomal protein S7 directly interacts with rRNA during the assembly of the small ribosomal subunit.
  • Comment:Ribosomal protein S7 plays a critical role in controlling rRNA folding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ###   #####  ##                                                         
YP_539021    100 KQLIKKLVHICmidGKKTRSRAIVYKTFHCLAqh---------------------------------------------- 133 Physcomitrella ...
CCO13927      30 NEVYLTFVQNLmkkGKKSTAENLFRKTLQNLKqktk-------------------------------------------- 65  Bathycoccus pra...
YP_002860131  28 IPILAKLTSFLtkkGHKTRAAGITFKVLHILEnlqsqd------------------------------------------ 65  Micromonas sp. ...
NP_042273     23 LENSNKFINLLmvdGKKSRAIRLFYDTLVLLKrknlkenskkesllgiigqlspknsiedlvnnsnklsnnsneeikipl 102 Prototheca wick...
XP_002961714  19 RLMVKKFMNSCmrqGKKTKARTMCFKAFERLAnh---------------------------------------------- 52  Selaginella moe...
YP_717292     18 SSIFKKLLQNMlkkGNKKKAQRLLFAVIFLVQqmyp-------------------------------------------- 53  Ostreococcus tauri
NP_689373     17 KALIHKFVNILmtqGKKTKSRQILFQTIEVLReslppsdek--------------------------------------- 57  Chaetosphaeridi...
NP_085579      9 KLLIKKLVNFRmkeGKRTRVRAIVYQTFHRPArte--------------------------------------------- 43  thale cress
YP_006280964  60 NYYIHKFLNKLmidGKKSKAFKIMNEAFDIILtvqaekkkdilsseateat---------------------------th 112 Helicosporidium...
ACO50730      42 RDFLVTVAGFLtkkGAKGKAHTLLKRVMHLLKkdpsa------------------------------------------- 78  Micromonas pusi...
Feature 1                                           #    #   #        ##  #   #      #           
YP_539021    134 ---------------gdILRLLVNAIENVKPVCEVKKVRISGTTQLVPSIIatNRQETLAIRWMLEAAAkrhmn------ 192 Physcomitrella ...
CCO13927      66 -------------nsenVFVVLEKAVKNVEPSFFLKKARLGGTSQQIPAALdkKKKKSTSIRALIQIATekqkkstqrkd 132 Bathycoccus pra...
YP_002860131  66 ------------tlrvhPIEIIQTALQNAKPVFELRKARIGGNTQFVPASLslNKQENRAIRTIISNANvkhkkgik-ak 132 Micromonas sp. ...
NP_042273    103 idnsksddksnlletisVLEVLSIALKNVTPSVELRKVRRAGNTFLIPAILsqHKANTLAIRWVIESAKkkqq------- 175 Prototheca wick...
XP_002961714  53 ---------------gdVLHILETAVENVKPICEVRRVRVAGSTHNVPAAIplHRQQSLSMRWIVQAARnrfka------ 111 Selaginella moe...
YP_717292     54 --------------tipKDQIFVQAIQNIQPSFEFKKARVGGMSQFIPGAKkpEKQENLAIRWILALAKekqrktk--iv 117 Ostreococcus tauri
NP_689373     58 ---------dkhkptqiTIDYLFQAISNVQPLLEVKKIRIAGSTQWIPSTIsvNRQQTLAIRWILEAAKkrpsvrvsfpd 128 Chaetosphaeridi...
NP_085579     44 ---------------rdVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVarDRQQTLAIRWILEAAFkrri------- 101 thale cress
YP_006280964 113 lsglksntssseamnqdVFHLFLLAIENVTPYLDVRKVRKSGTTLLVPYAItpERGIYNAFCWLIEAARekrrn------ 186 Helicosporidium...
ACO50730      79 -------------qkepSLVFLKTAVAQVTPSFELRKARISGRTQYIPAALpiQKAEGLGLRVLLSHAHkaartq----- 140 Micromonas pusi...
Feature 1             ##  #                                      
YP_539021    193 -kksmSLDQCLADEILDASRkmgIARKKRDDLHKLAQANRSFSHYRWW 239 Physcomitrella patens
CCO13927     133 iklasTFTHFLANELYEASQglgSALQKRDELHKLAESNRALLTQRWW 180 Bathycoccus prasinos
YP_002860131 133 npmmyTFAYSLAVEFFDAYKnqgKACQEKNLLHKQAENNRQYIHKRWW 180 Micromonas sp. RCC299
NP_042273    176 -nskqNFAECLADEIYQAYLkqgKARQKRDELHSAAISNRANIRYRWW 222 Prototheca wickerhamii
XP_002961714 112 -kkkmGMPKALADELLDASKrsgAARKKRDDLHRLAEANRTLAHYRWW 158 Selaginella moellendorffii
YP_717292    118 knkqyGFEYFLAQEILLAFKnesDLRNKKLEMHKLAETNKALAYQRWW 165 Ostreococcus tauri
NP_689373    129 rskgtRFSHKLAAEILEASKktgFARKKRDELHKLAEANRSFSHYRWW 176 Chaetosphaeridium globosum
NP_085579    102 -syriSLEKCSFAEILDAYQkrgSARRKRENLHGLASTNRSFAHFRWW 148 thale cress
YP_006280964 187 -hsrrKFSYYLAEEIILASQktgKAREKRHELHKTALANRSNTKYRWW 233 Helicosporidium sp. ex Simulium jonesii
ACO50730     141 sgqrkSFAMTLGNEVLQAKAhqgQAIQTKYTTHKTAEHNRTLMRRRWW 188 Micromonas pusilla CCMP1545

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