Conserved Protein Domain Family
rSAM_YfkAB

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TIGR04478: rSAM_YfkAB 
radical SAM/CxCxxxxC motif protein YfkAB
Members of this highly conserved family in some Firmicutes have an N-terminal radical SAM domain (pfam04055) and a C-terminal pfam08756 domain with a CxCxxxxC motif that suggests binding to an additional metallocluster. It appears all correct sequences in this family are about 370 amino acids in length, containing the YfkA and YfkB regions originally reported as separate ORFs in Bacillus subtilis. Partial Phylogenetic Profiling shows occurrences almost exclusively in the Bacilli, with very few examples of either lateral transfer or gene loss. The essentially monophyletic distribution suggests a housekeeping function. Members have no well-conserved gene neighborhood. The function is unknown. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 275271
Aligned: 16 rows
Threshold Bit Score: 655.531
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_03614116    7 KPISIQNDPWEAYNDIIDHGKLTLSNIEFTTTNLCNMRCSHCAVGYTLQTKDPD-PLPMDVIYRRLDEIPNLRTMSITGG 85  Staphylococcus ...
ZP_08284082   13 RPISPSYDPWDPITSLREHGRHVLTSVEMTVTHLCNMRCEHCAVGDMLVMKEAP-MLPLDTMLKRLDEVEHLQTISLTGG 91  Paenibacillus s...
ZP_09073486   14 PQITPEYDPWDPLRSLQTHGEHRLTSVELTVTNLCNMRCEHCAVGESLLVSEGP-RIPLNVILKRLDEVEGLETISITGG 92  Paenibacillus e...
ZP_07388478   15 PELSPAYDPWDPIVSLQRYGRHTLTSVEMTVSNLCNMRCEHCAVGDTLVLAEPA-KIPLDQMLRRLDEVEHLETISITGG 93  Paenibacillus c...
ZP_02329474   10 ALLSPENDPWDPIRSLRQYGKHTLTSVEFTVSNMCNMRCEHCAVGDTLTASEGS-KFPLDLIFKRLDEVEHLETISITGG 88  Paenibacillus l...
ZP_08534187   19 LPDERHIDPWESLFRRNELGTNRLTSVEFTVTNLCNLRCEHCAVGDVLTVKESEtRIPLSLLLKRLDEVELLDTLSITGG 98  Caldalkalibacil...
WP_011064842   8 QPMSPTNDPWEAYMDVEQHGKMTLSNIEFTTTYMCNMRCAHCAVGYTLQQMDPD-ALPMELIEKRLDEIPHLRTLSITGG 86  Oceanobacillus ...
WP_011246143   5 QTIAPHTDPWEAYRDIEQYGELTLSNIEVTTTTLCNMRCEHCAVGYTLSPKDPN-PLPLDLLIRRLDEIPRLRAFSITGG 83  Bacillus clausii
WP_015880866   2 QNISPTFDPWEAYLDQVEHGRLVLSNVEVTTTKLCNMRCEHCAVGYMLDQTEEP-EVPLDLLIQRLDEIEHLRAFSITGG 80  Exiguobacterium...
WP_011194762   2 GEWGFIADPWEPRRGMED-GRFRLTSVEITVTNWCNLRCRHCAVGESLMDRDPE-RLPLDLILRRLDEVEGLTTLSLTGG 79  Symbiobacterium...
ZP_03614116   86 EPMFSKKSIKNVVKPLLKYAFDRGIYVQMNSNLTLPQDRYLEIAEYIDVMHISHNWGTIQEFTDVGFGAMKKQPPLKAKL 165 Staphylococcus ...
ZP_08284082   92 EPAFLGKTVDNVIVPLLKYAKERGIRTQINSNLTLDIGRYEKMLPYLDVMHISFNYLNGDDFYEVGFANSARPVSKETAY 171 Paenibacillus s...
ZP_09073486   93 EPSYHEQTVREYIVPLLRYARERGVRSQINSNVTLDLSRYEAMAPYLDVMHISFNYLNADDFYEVGFVRTDRRVSATTAA 172 Paenibacillus e...
ZP_07388478   94 EPSFSESTVRNYMVPLLRYARSRGIRSQINSNVTLDYKRYEQMAPYLDVMHISFNYTTADDFHQVGFARSGHSVSRDTAV 173 Paenibacillus c...
ZP_02329474   89 EPTFHLKTVKDIIIPLLKYAKERGVRSQLNSNLTLDLARYELIAPFLDVMHISFNYTNVEDFHQVGFVRADREVGKTAAT 168 Paenibacillus l...
ZP_08534187   99 EPMYNKEIIAEYIVPLLRYAKERGAQTQINSNLTLDLSRYESVLPYVDVLHISYNYRDAEDFYHIAYARHMHQVSFAQAE 178 Caldalkalibacil...
WP_011064842  87 EPMMNKKSVRQYVLPLLKYAHERGIKTQMNSNLTLPYNRYEEIVPYLDVLHISHNWGTVEEFAETGFALMDRKPSEENRA 166 Oceanobacillus ...
WP_011246143  84 EPMMNMKSVREYVVPLLKYAHERGAKTQINSNLTMPLERYDLILPYLDVLHISHNYGSVDDFSLIGFAHSKHKPKEEQRH 163 Bacillus clausii
WP_015880866  81 EPMLSMKSVRNYVVPLLRYAKERGARTQINSNLTLPLSRYHLITPYLDVLHISHNWGTDADFLEGGFAMMDRKPSEEARL 160 Exiguobacterium...
WP_011194762  80 ELSGSTEVLRRWVAPLLQYAKRRGLQTQVNTNLTFDLGRYEEIAPWVDVFHITWNYRDEAHFHRIVWGHGSREVSPEASR 159 Symbiobacterium...
ZP_03614116  166 KLYEQMLDNSRTLSEQGMFVSAETMLNQSTLPYLDKIHNEIVnDMKCSRHEVHPMYPADFASQLNVLSLKEMKDAINHLL 245 Staphylococcus ...
ZP_08284082  172 KMYDTMLVNSEKLSAAGMYISAESMINYRTHTKLGGIHKLIK-DMGCKRHEVHPMYASNFASALPVLSLADTKAAIHHLL 250 Paenibacillus s...
ZP_09073486  173 KLYERMVENAKALASGGMFVSAESMINYRTHGKLSGIHKLIR-EMGCRRHEVHPMYPSAFASNLPVLTLDQTRAAIHRLL 251 Paenibacillus e...
ZP_07388478  174 RLYERMMDNARRLSEAGVLVSAESMINYRTHHKIAEIHQLII-EMGCQRHEVHPMYPSSFAANLPMLSREEMRAAIERLL 252 Paenibacillus c...
ZP_02329474  169 RLYDRMVENTVALSKAGLFVSAETMINYRTYEKLGHIHKLID-EMGCKRHEVHPMYPSSFASNLPILSLDQLREACHQLL 247 Paenibacillus l...
ZP_08534187  179 KTFQRLVDNTKALAQAGVFVSAESLLTPFTRDKIGQIHHLIK-EMGCQRHEVHPLYPSDFARNMQVLTLDELRETYHRLL 257 Caldalkalibacil...
WP_011064842 167 KYFDRMVENAQRLSKEGVMVSAETMLNKRTFPHLESIHDHVL-EMGCARHEIHPMYPVDFAENLEILSLDEMREGITRLL 245 Oceanobacillus ...
WP_011246143 164 AMFQRMIENAKALTARGVIVSAETMLNKRTLPHLENIHQQIV-EMGCQRHEVHPMYPSDFASSLEVASLDEIKSGIHRLL 242 Bacillus clausii
WP_015880866 161 KMLQTMKDNARALTSEGIIVSAETMINKRTIPHLKEIHEEIV-SLGCQRHEVHPMYPADFASALESASLADTRQAIHDLL 239 Exiguobacterium...
WP_011194762 160 RLFRRIIDNARALAAQGRFVSAETMINAETADHLGAMNRFLA-EIGCRRHEVHPMYAVDWASDLPVLPLPAFREAIRRFL 238 Symbiobacterium...
ZP_03614116  246 DIRDEDIWMLFGTLPIYPCINDENDQKLLQRLRDAKNVTMRNDPDGRSRLNVNVFTGNVIVTDFGDeNGTISNIQKDKLT 325 Staphylococcus ...
ZP_08284082  251 DVRDRDMWMLFGTLPFYACSSDDHDQEIIRRLRQEPNVTVRNDPDGRNRVNVNLFSGDVYVTDFAD-IPAFGNIKEQKLD 329 Paenibacillus s...
ZP_09073486  252 DDRDRDLWMLFGTLPFYACSPLEEDRELITRLRREPKVTVRNDPDGRNRLNVNLFTGDVFVTDFAD-VPSLGNIHADRLD 330 Paenibacillus e...
ZP_07388478  253 DARDKSVWMLFGTLPFFRCSSNPEERALLARLAAEPNVTVRNDPDGRNRLNVNMFTGDVFVTDFSD-VPAFGNVKNDRLD 331 Paenibacillus c...
ZP_02329474  248 DVRNPQMWMLFGTLPFFSCNPSEEDLKLIRRLRSEPNLTVRNDPDGRNRLNVNLFTGDVYVTDFAD-VPPLGNVKQDRMD 326 Paenibacillus l...
ZP_08534187  258 DERDPDLWILFGTLPFYACSQNEADLALIKRIYSTPNTTVRNDPDGHNRLNCNIFTGEVTVTDFGD-VGPLGHIEQDSLT 336 Caldalkalibacil...
WP_011064842 246 NHRNQDLWMLFGTLPFYACSRNDEDIELLKRLYKEPNVSVRNDPDGRSRLNVNIFTGDVIVTDFGD-EPKLGNIKTDSLP 324 Oceanobacillus ...
WP_011246143 243 DCRNQNVWMLFGTLPFYPCSNNEDDLQLQKRLYSEPNVTVRNDPDGRSRLNVNLFSGDIIVTDFGD-VPKLGNIQDSRFD 321 Bacillus clausii
WP_015880866 240 DVRDENVWMLFGTLPFYACSDLPEDRALLKRLHETKNVTVRNDPDGRSRLNTNIFDGQIIVTDFGDeLGSLGTVYDTSFQ 319 Exiguobacterium...
WP_011194762 239 AERDPNLWVLFGTFPFLPCSPLPEDQDLLRAVAAAPNVSVRNCPDGRNRVNVDLFTGAVRVTDFGG-MEPLGNVRTERLE 317 Symbiobacterium...
ZP_03614116  326 DVFDQWL-DSELAKSLNCHCPEYQCLGPNVLVKNMYYPKTDFKQKEK 371 Staphylococcus capitis SK14
ZP_08284082  330 DIFDAWStGHPLNQTVNCHCDAVSCCGPNLLVADMYYRGVDFKSRKA 376 Paenibacillus sp. HGF5
ZP_09073486  331 QVFARWK-DHRLSKTVNCHCPAANCCGPNLLVVDTYYKGIDFGQRKA 376 Paenibacillus elgii B69
ZP_07388478  332 DVFDRWL-DGSLARSIDCHCPAAGCCGPNLLVKDMYYRGENFLSRQA 377 Paenibacillus curdlanolyticus YK9
ZP_02329474  327 DVFATWE-GHPLNRQVNCHCPQANCCGPNLLVVHAYYPKVDFMGRKA 372 Paenibacillus larvae subsp. larvae BRL-230010
ZP_08534187  337 TCFERWQ-EHPAFKPMKCCCPQAQCNGPNLLVIHTYYQGVDFRNRHG 382 Caldalkalibacillus thermarum TA2.A1
WP_011064842 325 SAYNRWM-ETNTAKSLNCHCPAVSCLGPNVLVKNAYYKDVDFQQRKA 370 Oceanobacillus iheyensis
WP_011246143 322 EAYARWR-DSAINRSLSCHCPSVQCLGPNLLVKNTYYRETDFSKRSA 367 Bacillus clausii
WP_015880866 320 EAYDTWT-NSQLNATLSCHCPAVKCLGPNALVKQAYYPTVDFQSRKA 365 Exiguobacterium sp. AT1b
WP_011194762 318 DAFRRWH-AHPRFQRLNCHCPEVGCTGPDLLVAEMYYPEVDFRTRRA 363 Symbiobacterium thermophilum
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