3L0O,1A8V


Conserved Protein Domain Family
Rho_N
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smart00959: Rho_N 
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Rho termination factor, N-terminal domain
The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.
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Statistics
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PSSM-Id: 198027
Aligned: 172 rows
Threshold Bit Score: 29.265
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3L0O_A        12 ELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTG 54  Thermotoga maritima
YP_001213385   5 DLESKTMVELYKIARELELPGYYKLRKKELIFEILKTQTEKHG 47  Pelotomaculum thermopropionicum SI
YP_431227      5 ELESKTMVELYRIARELNLSGYSRMRKKELVFEIAKALAqkeq 47  Moorella thermoacetica ATCC 39073
YP_001114501  13 QLEAKTMQELYGIARELEIPGYYKFRKKEIIFEISKLQSKQSG 55  Desulfotomaculum reducens MI-1
YP_359002      6 QLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKak 48  Carboxydothermus hydrogenoformans Z-2901
YP_755068      5 ELENKTMLELYQVARDLNLAGYSKLRKKELVFEITKALTHADQ 47  Syntrophomonas wolfei subsp. wolfei str. Goettingen
YP_252829     17 LYKNYTTKELTQKAKTLKLTNYSKLNKSELVLAIMEAQMEKDG 59  Staphylococcus haemolyticus JCSC1435
NP_950994    165 DLSKMLLHELKKLAKEHKVPNFHKLKKAEIVTALKKALAKKII 207 Onion yellows phytoplasma OY-M
NP_866448     98 DLQKLEHDELLALAETEGLQEIAALPRQELVFRLLKARMSANG 140 Rhodopirellula baltica SH 1
ZP_06299538   48 DIQRMNIDQLNQYGKKIGLKHLGSLTKSQMVFEIVKAISENPN 90  Parachlamydia sp. Hall's coccus
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