Conserved Protein Domain Family
Smim3

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pfam17307: Smim3 
Small integral membrane protein 3
This domain family can be found in Smim3 proteins (Small integral membrane protein 3) also known as NID67 (NGF-induced differentiation clone 67). It is a primary response gene, hypothesized to be involved in forming or regulating ion channels in neuronal differentiation. It is strongly induced by NGF (Nerve Growth Factor) and FGF (Fibroblast Growth Factor), both of which cause these cells to differentiate. The amino acid sequence of NID67 is strongly conserved among rat, mouse and human. This family of small membrane proteins is only 60 amino acids long and analysis of the predicted peptide sequence reveals a stretch of 29 hydrophobic and uncharged residues which very likely comprise a trans-membrane region.
Statistics
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PSSM-Id: 407417
Aligned: 6 rows
Threshold Bit Score: 65.592
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004009031  1 MEATSQIPMEVVLPKHILDIWVIVLIILATIVIMTSLLLCPATAVIIYRMRSHPILNGPV 60 
XP_014311682  1 MDPGSEVLTQDTLPKHILDIWVIVLIILATIVIMTSLLLCPATAVIIYRMRTHPVLNGAV 60 
XP_007473932  1 MDPISQASPKDVLPKHILDIWAIVLIILATIVIMTSLVLCPATAVIIYRIRTHPILNQAF 60 
Q99PE5        1 MDAITQSPVDAVLPKHILDIWAIVLIILATIVIMTSLFLCPATAVIIYRMRTHPVLNGAA 60  house mouse
XP_005053534  3 LPHLT-SPTDL--PKHILDIWVIVLIILATIIIMTALLLCPATAVIIYRVRTHPTRNGIV 59 
XP_007653531 14 ETSGGVTPVEVALPKHILDVWVIILIILATILVMTSLVLCPATAVIIYRVRTHPMRNGVV 73 
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