1O0W,2A11,1YYK


Conserved Protein Domain Family
RIBOc

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smart00535: RIBOc 
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Ribonuclease III family
Statistics
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PSSM-Id: 197778
Aligned: 58 rows
Threshold Bit Score: 73.4068
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1O0W_A     36 ELLFRALCHSSY-A--------------------N-EqnqagrkdveSNEKLEFLGDAVLELFVCEILYKKYPEAE---- 89  Thermotoga maritima
NP_195467 169 TLLYLAFQHPSC-D--------------------R-Ararh---vknGHSRLWFLGQYVLELALTEFFLQRYPRES---- 219 thale cress
NP_596672  63 kvLVQALIDKTVvQ--------------------N-Pq--------ySNEKLWSIGKVFGDFYVLEYIKCKYPRLP---- 109 Schizosaccharomyce...
NP_013416  85 ELILQCLTHKSF-A--------------------HgSk--------pYNEKLNLLGAQFLKLQTCIHSLKNGSPAEsc-e 134 Saccharomyces cere...
NP_173854  63 NLLRRAMTHASF-S--------------------Q-E----------NNKALSIFGTHIIETAVSLQFLAKDIDIS---- 106 thale cress
Q05370      1 -----------------mvmmasapflpivsdaiaaQr--------lSPSALAYFGDAVYELFIRFIFLTPPQRIN---- 51  Synechococcus sp. ...
NP_013737 114 STLSRCLTCPSA-KlpdkinnptkgaafvntvptN-Ky--------lDNHGLNIMGKNLLSYHVTKSIIQKYPRLP---- 179 Saccharomyces cere...
NP_441741  12 SSLNPADAPAVQ-S--------------------L-S-----------PVALAYLGDAVFELYVRCCYLFPPRRIG---- 54  Synechocystis sp. ...
NP_229538   2 EKLFRFEAEPEK-L--------------------P-P------------AVLAYLGDAVLELIFRSRFTGDYRMSViher 47  Thermotoga maritim...
NP_387976   1 MLEFDTIKD-SK-Q--------------------L-N-----------GLALAYIGDAIFEVYVRHHLLKQGFTKP---- 42  Bacillus subtilis ...
1O0W_A     90 VGDLARVKSAAA--------SEEV-LAMVSRKMNLG-----------------------KFLF--LGKG-----EEKTGG 130 Thermotoga maritima
NP_195467 220 PGPMRERVFALI--------GKRY-LPKWIKAASLQ-----------------------NLIFpyDDMD-----KLIRKE 262 thale cress
NP_596672 110 EEAVHGMQNGWM--------GSKA-LSQLATIWGLEvqrree------------glqesFGKV--LAKR-----ADPEML 161 Schizosaccharomyce...
NP_013416 135 NGQLSLQFSNLGtkfakeltSKNT-ACTFVKLHNLD-----------------------PFIF--WKMR-----DPIKDG 183 Saccharomyces cere...
NP_173854 107 SKALGRLISEVS--------NVESsCALDGDRLGLG-----------------------KIIR--VSTK-----TDASNS 148 thale cress
Q05370     52 --AYHHQVVAHV--------RAES-QARYMDILWPHcta-----------------aelTIFR--QGRN-----AAADGP 96  Synechococcus sp. ...
NP_013737 180 TVVLNAAVNAYI--------SEAV-LAHIAKYWGIEvettsvlsrylkmepfeftlgrlKFFN--NSLNskdgiELITGK 248 Saccharomyces cere...
NP_441741  55 --DFHRRVVAQV--------RAEQ-QAQILTTLLPQltd-----------------pekEWVR--RGRN-----AATSTS 99  Synechocystis sp. ...
NP_229538  48 VKEHTSKHGQAW--------MLEN-IWNLLDEREQEi----------------------VKRA--MNSK-----AAKRHG 89  Thermotoga maritim...
NP_387976  43 -NDLHKKSSRIV--------SAKS-QAEILFFLQNQsff-----------------teeEEAV--LKRG-----RNAKSG 88  Bacillus subtilis ...
1O0W_A    131 --R------DRD---SILAD-----AFEALLAAIY---LDQG--YEKIKELFEQEFE--FYIEKI 172 Thermotoga maritima
NP_195467 263 --R------EPP-----VKS-----VFWALFGAIY---LCFG--MPEVYRVLFEVFGmdPDADEC 304 thale cress
NP_596672 162 --R------KPG---EIYKDeaarrAILAILGGVY---LHQG--FNDTKKFINDHILs-KQLDPR 209 Schizosaccharomyces pombe 972h-
NP_013416 184 hiN------GET---TIFAS-----VLNAFIGAIL---STNG--SEKAAKFIQGSLLdkEDLHSL 229 Saccharomyces cerevisiae S288c
NP_173854 149 --A-------------ILCT-----GFRAIFGAIA---IDAGt-VDEAIKVFWKVHG--ARAGRL 187 thale cress
Q05370     97 --K------RVPakiYRQAT-----GFEALLGYLY---LTDPqrLQDVLALLEQHIR--AEVAAA 143 Synechococcus sp. PCC 6716
NP_013737 249 --Nf-----SET---SALAM-----SVRSIIAAIWavtEQKD--SQAVYRFIDDHIMs-RKLDIT 295 Saccharomyces cerevisiae S288c
NP_441741 100 --Rra---nPEL---YQAAS-----GLETLLGYLY---LRDA---RRLDELLALIEL----PDAA 141 Synechocystis sp. PCC 6803
NP_229538  90 --N------DPT---YRKST-----GFEALIGYLF---LKRE--FDRIEELLRVVMD----LESL 129 Thermotoga maritima MSB8
NP_387976  89 --TtpkntdVQT---YRYST-----AFEALLGYLF---LEKK------EERLSQLVA--EAIQFG 132 Bacillus subtilis subsp. subtilis...
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