7OXP


Conserved Protein Domain Family
Seipin_Sei1_like

?
cd23994: Seipin_Sei1_like 
Saccharomyces cerevisiae Seipin and similar proteins
Seipin is a homo-oligomeric integral membrane protein in the endoplasmic reticulum (ER) that concentrates at junctions with cytoplasmic lipid droplets (LDs). It acts as a cell-autonomous regulator of lipolysis essential for adipocyte differentiation. Seipin is predicted to contain two transmembrane domains at N-terminus and C-terminus, respectively. This model corresponds to a group of seipins from Saccharomycotina. Saccharomyces cerevisiae seipin (Sei1), also called few lipid droplets protein 1 (Fld1p), is involved in lipid metabolism and lipid droplet (LD) morphology, number, and size. It facilitates initiation of LD formation and ensures that vectorial budding of LDs from the ER is directed towards the cytoplasm. In contrast to human seipin, Sei1-mediated LD formation depends on Ldb16, a yeast specific binding partner. Sei1 forms a homodecameric ring that scaffolds and positions Ldb16.
Statistics
?
PSSM-Id: 467828
Aligned: 19 rows
Threshold Bit Score: 167.08
Created: 27-Apr-2023
Updated: 27-Apr-2023
Structure
?
Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 38 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:7OXP; Saccharomyces cerevisiae seipin forms a homodecamer, contacts at 4A
  • Comment:Sei1-mediated LD formation depends on Ldb16, a yeast specific binding partner. Sei1 forms a homodecameric ring that scaffolds and positions Ldb16.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       ####                    # #      
7OXP_A        48 DSSNVVPLn----tFNILNGVqf-gtKFFQSIKSIpv-gTDLPQTi-DNGLSQLIPMRdnmEYKLDLNLQLYCQSkt--- 117 baker's yeast
XP_003678477  48 DASQTFPLs----kFQKITQEkg-lvQFKQSIKRIphesAQLPILs-NNGIPEPIPLRdhvNYIMDLRLQLFCRThq--- 118 Naumovozyma cas...
XP_003955154  48 DSLQFVPIs----kFDQGKVEdv--lIFKQDIDRIsl-nDDLINLd-NNGISEKIPLRefiNYELDFAFDFYCQSel--- 116 Kazachstania af...
CUS20244      48 DTTQTVSFs----eSKREMGGwtgktTFQFDFKRFstedTNLPTVs-SNGFAQSVPLRsdiPYNIDVTLNIFCLNkvt-- 120 Lachancea quebe...
SCU97532      48 DSTRTVLFs----eSRRELGSwsgksTFNFVFQRHstntVMLPQIe-INGFAQNVPLRadiPYNMNLDLDIFCLNkvt-- 120 Lachancea sp. C...
SCU98485      48 DSVQTVPFaa---gQQLGTGWsggkaIYAFKLKRYstetAEIPQVi-PNGFPQGVPIRadiPYNVNLDLNVFCLNkvt-- 121 
SCW01829      48 DTVQKIPFsigsktSQLVDGNt----IFRFRLKRLssetAILPQVi-DNGLTQDVSLRsdiPYNFDLKLNIFCLNts--- 119 Lachancea ferme...
SMN22691      48 DSSQLVPLs----vFNLTQLSes-hfHYYQELEKVpa-hNDLPTVk-QNGLIQHIPLRehiDYRIDANFKFYCLIddt-- 118 Kazachstania sa...
OXB40632      48 DSSVWVPLd----nFNSNASGln--tRFKQGIVCVsp-dKQLPGLk-PNGLSQPIALRchtNYKLDMKLEFYCHSldaig 119 Nakaseomyces gl...
XP_022463297  48 DSMLHIPLs----kLYKTNHG-----SLCLEIDRMg--eGDLPVVanDGLTNQRTFLHggtTYNLDFKIKFYCLTt---- 112 Kazachstania na...
Feature 1           ######                        #### ### #            ## #####   ###  # ###    
7OXP_A       118 --dHLNLDNLLIDVYRGpgpllgapggsnskDEKIFHTSRPIVClalt----dsmSPQEIEQLGp-SRLDVYDEEWLNTI 190 baker's yeast
XP_003678477 119 --gEFPSTPLTVSLSSNvg-----------rGTPLYVKEWQVVCmrpgadiyereLYSDAKTHG--NRRAAFEREWVNTV 183 Naumovozyma cas...
XP_003955154 117 --eTFNLQNVKISIQAN--------------DLPLYVLEMPIICit-------knDTILLNSHT--SRLELWQLEWLNKI 171 Kazachstania af...
CUS20244     121 -dwSIRDAEVSLSVFKSgk----------ssASVVFRKTLLLSCantr----dvhSVSGTRRLTt-TFSKQIQDELVNSY 184 Lachancea quebe...
SCU97532     121 -dlCLKDGEVTISVNRAge----------svDKTLFRKTLLLSCantr----dipNMGGSGRLSl-TFAQKVQKELVNSF 184 Lachancea sp. C...
SCU98485     122 -dlSIRDGEITLSVSRHgk----------paENVLFRKTLLMTCantr----dipTLGASGKLSp-TFARKVQQELVNHI 185 
SCW01829     120 --pGLNIKEGTITVSASskk--------nwmDSVIFQKTVLLSCantn----diiALGEAGSLSs-TFSQRVQKELVNSF 184 Lachancea ferme...
SMN22691     119 sypRHNLQVATVSVYGYtvs---------deHILLHSKYVPIMClttk----dsiTLPEGTQLKg-SRMKQYKTEWLNEI 184 Kazachstania sa...
OXB40632     120 kskGTDLQYAVVSLSDD--------------SNLFYRYRQPVICrnq-----gatNVLEGNNHAk-SRMEVLRNEWLNSL 179 Nakaseomyces gl...
XP_022463297 113 --kEQVLHTVFVELESN--------------HVKMFMREIPVVCarg-----dafVETLLSSSRdtALRDKYATQWVNEL 171 Kazachstania na...
Feature 1            #                   #     #  #                           
7OXP_A       191 RIEDKISLEss--yETISVFLKTEIaqRNLIIHPe-----------------SGIKFRMNF 232 baker's yeast
XP_003678477 184 HWEDVISLPpd--tKHLTLSVEKRGa-VELLFKMddd------------ddgSAVQIRETF 229 Naumovozyma castellii CBS 4309
XP_003955154 172 HIDNVVTVPsn--vDIISIVINKPSh-SHFLVKPd-----------------SNLNFRMDF 212 Kazachstania africana CBS 2517
CUS20244     185 RLESPFFVEhd--aKCLEISLRCAGn-ANLIVDPn----------------sSELKLSMNF 226 Lachancea quebecensis
SCU97532     185 HFDNPISIEhn--vKSLDITLKLAGn-ANVIIDPn----------------rSYLTFSMNF 226 Lachancea sp. CBS 6924
SCU98485     186 HLEKPIILQhd--vEKLELSLKFAGn-ANLIVDTs----------------tSFITLSLNF 227 
SCW01829     185 FWEDYVLDHd---vQNVVVSLKFAEg-SYFIVDAe----------------sSELKFSMNL 225 Lachancea fermentati
SMN22691     185 ILDDISDFStdsniKGLVVRFNFKSe-HHDLIDSfnhgfvdknryallmnfeSQLNFRINF 244 Kazachstania saulgeensis
OXB40632     180 SLEDIADISpq--lENIEISIDLPNsnGEILLEPt-----------------SGILLRRSF 221 Nakaseomyces glabratus
XP_022463297 172 DVEDAVVIPp---qTHNFFLSLKSS--SELIFDPd-----------------SRIQLRATF 210 Kazachstania naganishii CBS 8797

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap