5N5Y


Conserved Protein Domain Family
RNA_pol_I_TF

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pfam04090: RNA_pol_I_TF 
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RNA polymerase I specific initiation factor
Statistics
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PSSM-Id: 367807
Aligned: 11 rows
Threshold Bit Score: 224.571
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5N5Y_R       173 MEip-lLHCTKENKLYFQSISRGLEPLKt----------STSEVRNY----RTRHIVTLTDLLHLNVSRHNWSLAYKIFA 237
Q6FNG8       161 VEkn-vVHMPLVNKRYFDIKSEGYEVLE-----------PLVDIDSY----LLKHIEILTQILFSSVSQGNWDIAYRTFS 224 [Candida] glabrata
EDN64352     173 MEip-lLHCTKENKLYFQSISRGLEPLKt----------STSEVRNY----RTRHIVTLTDLLHLNVSRHNWSLAYKIFA 237
EDO17415     144 IQvp-lIRSNRKLQENFLSVIDGYELIDd----------NINLKENF----TMVNVKLLTDLMYESIFKENWKIAYRCFT 208
O94332         1 MFsp-cTVKEKRSTLRSVAPNPESSVIPp----------IPLPSRRY----KTRHIDALCSLMHLCLLRKDYPRASRAFS 65  Schizosaccharom...
XP_001525502 212 QFtnavDGRGGEARKNFLIESQGLEIIP-----------SPSEIKSE----VTKHITNLNTLLHLNILRRNWKMAYKIFC 276
XP_001385887 149 AF----DSSNHWVKSSFLIRTNGLEVLPt----------IKQENKDYv---QRQHIGNLKVLLHLNVLRQNWDLAYKIFC 211
Q6BQE4       144 SF----DLSSTWTKANFLIKTKGLEVLPhdsl----etdSPSMIRNGnvglRNHHINNLKTLLHVNILRRNWGLAYKIFC 215 Debaryomyces ha...
Q75CC9       212 MKat-lSLSTKKAAAYHEVMRLGYETCP------------KEEVTNY----QKLHLNHLVGLLYSNIISENWGTAYRCFA 274 Eremothecium go...
Q6CUD1       156 VTkk-lNYQTKKLNMYFQALKFGFDVYP------------KPQLSKQ----KTMHLAHLNQLLYTNVLNQNWEIAYRCFS 218 Kluyveromyces l...
XP_001482546 132 TF----DQSSTWEKANFLIRAKGLEVFPhhdvpngslygVTGDMRLKfg-lKKTHAAHVTVLLHLNILRRNWNLAYKLFC 206
5N5Y_R       238 TLIRIPGVQIKSLWGIGVEILDNLSNSSSGL---------------DFLQWMCQIYS---SKSRFVQNINYRsIVPPFQT 299
Q6FNG8       225 LLIRIPEVDIRNIWGLGTRILMERGQTTRSL---------------EFLKWMSTVYS---SKQNFVQSHCHR-KAPVFRS 285 [Candida] glabrata
EDN64352     238 TLIRIPGVQIKSLWGIGVEILDNLSNSSSGL---------------DFLQWMCQIYS---SKSRFVQNINYRsIVPPFQT 299
EDO17415     209 LLIRLPKTSIRKIWNLGSMIIENLEGINKTI---------------EFLKLFNNIHSr-yKKKIFNQTVNYR-EAPVFND 271
O94332        66 LLLRSKSVDISKLWNIGLEILNKVNPEASS----------------EYMERLIARYP---ARPSINNSYPNRnAEHFF-- 124 Schizosaccharom...
XP_001525502 277 ILVRFPQVDVRQIWPLGVEVLIQLSKVEESQhkqhkvgttfdkkarKFFEYMNNFYSvakQGSASYNNTDRPdLAPVYRG 356
XP_001385887 212 LLIRLPSVDIRAIWPIGIEILIRQQEKLTHEgaeri-----tskdeRFYDWLSSFFTiayVNAAHSDGPSKVsLAPIWRS 286
Q6BQE4       216 LLIRLPKVDIRSLWPLGIEILNRQREETAYDnkdik-----lfkdeKFFDWLSSFFIinrHSNTFNLSNTRKiSAPIWRS 290 Debaryomyces ha...
Q75CC9       275 LLIRMKSVDLRSIWNLGSHILSHLNFDMHE----------------KFLEWMGTVFT---SHSVFSQNKVNL-IDPVFRS 334 Eremothecium go...
Q6CUD1       219 ILIRLEDVDVRSLWSIGSEILNSLGDTQSNE---------------AYLEWLAHVFP---SRVQFNQGTNYS-LDPVFRC 279 Kluyveromyces l...
XP_001482546 207 LLIRVPDIDIRTIWPLGIEILSQKQRETAKNgvepe-----lykdeKFFDWLTSFYStrwHHKSTTSYPSRRsAAPVWRS 281
5N5Y_R       300 GSRTHTAKFAITYLWSSLINCQksmepssnii---------dkpfdtendlLQELIDKISEWVLTPPFMEDAEVWFIYAS 370
Q6FNG8       286 GSRTHTPKYALTWLWNCLIKVTelisieeekgvntneeendngskqsamdkLTELIDKISEMVLVPPYLDDPEIWFIYSM 365 [Candida] glabrata
EDN64352     300 GSRTHTAKFAITYLWSSLINCQksmepspnii---------dkpfdtendlLQELIDKISEWVLTPPFMEDAEVWFIYAS 370
EDO17415     272 GSRNKTPIYIKTLLWKEITTTStssr---------------------tssnYNELIEYLSELTLIPPFMEDSEIWYIYGI 330
O94332       125 ------PAYIM-----LLIQRQe----------------------------YNKAMKLLDEYLLLPPYNQNPALHEYSGM 165 Schizosaccharom...
XP_001525502 357 GTIKVTPLYLICSLWHLFVRRE-----------------------------YEHVQREIQDLILVPPYSSEGVLYYILAL 407
XP_001385887 287 GSKSHTPLYIVSSLWNLLSKGK-----------------------------YQTLEQRLGELVLEPPYNSDGVFYFLMVL 337
Q6BQE4       291 GSKTHTPMYVITSLWGLMIKNK-----------------------------YTRLRDRLDELLLEPPYDTDGVFYFLMAL 341 Debaryomyces ha...
Q75CC9       335 GSRAHTPNFMLAWLWLVLRGATadevl-------------------dstrsMAWLLEKVSELVLRPPYMDDAEIWFLYAM 395 Eremothecium go...
Q6CUD1       280 GSRTHTPTFVLTWLWTRLFIATsgssav------------------dkekfLQSLIDRLDEMVLSPPYMDDSEIWYIFGL 341 Kluyveromyces l...
XP_001482546 282 GSRTHAPLYVISSLWTLLVRRD-----------------------------FSKLNDKLSEMLLEPPYSTNGVFHFLLAS 332
5N5Y_R       371 CHLLKADTLSRQF 383
Q6FNG8       366 CHMVHADYLSGKF 378 [Candida] glabrata
EDN64352     371 CHLLKADTLSRQF 383
EDO17415     331 VHLQRANELSMNL 343
O94332       166 LCFELAKEEASES 178 Schizosaccharomyces pombe 972h-
XP_001525502 408 CRVCQCEEIVTHF 420
XP_001385887 338 CNIVEATEIVNRF 350
Q6BQE4       342 CKLLENFKLANKF 354 Debaryomyces hansenii
Q75CC9       396 CYFIQADKLSAQL 408 Eremothecium gossypii
Q6CUD1       342 THLVMASELSSKF 354 Kluyveromyces lactis
XP_001482546 333 SKLLEAFDLKDQY 345
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