Conserved Protein Domain Family
PRK12513

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PRK12513: PRK12513 
RNA polymerase sigma factor; Provisional
Statistics
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PSSM-Id: 183566
Aligned: 22 rows
Threshold Bit Score: 212.627
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
262200030   6 ALAGRGGLGEEADEDLMLRY-QNGEVRAFEILLTRHRRPIFNFILRFVGARDRAEDLMQETFLRVVKKADTYKKQAKFTT 84 
108758181   9 RRVGGVLGPETSDERLMLAF-QAGDARAFEALVRKHRTPVFNFILRFTGHRARAEDVLQETWLKVVRSAGDYTPKAKFTT 87 
161610397   1 -----MDTASAADEALMLAYgAEGDMDAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTT 75 
33592354    1 -----MDTASAADEALMLAYgAEGDMDAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTT 75 
163857471  24 IHSAAMDIPGADDETLMQAY-GAGNLAAFDALYARHRAGLYRYILRSTRNPHQADDIFQETWSRVIDARARWQPRARFTT 102
162454224   1 --MVPISREEVTDEALMMRF-QGGDRAAFAGLVRRHKTSIYNFILRQVRGPAIAEDLVQDVFVKIVQSASDFKHEARFTT 77 
194365388  20 TLYAVEASALPTDEALMLAW-AGGDLRAFESLYARHRKRLFGFLLRQLRDNALAEEIFQDVWQRVISARAGWQPEAAFST 98 
190573973  43 TLYAVEASALPTDEALMLAW-AGGDLRAFESLYGRHRKRLFGFLLRQLRDTALAEEIFQDVWQRVISARAGWQPDAAFST 121
153003127   1 ------MAADESDERLMLRF-QAGDARAFEALVGRHRTPVFSFLVRLTADRARAEDLCQEVFLKVVKASRTWEERARFRT 73 
197120661   1 -------MPDESDERLMLRF-RDGDARAFEALVRRHRTPVFSFLLRLTRDRARAEDLCQETFLRVVKASGAWEPRARFRT 72 
262200030  85 WLYTIARNLCVDHSRRQKHRKAKSLDQpmggagasDGDRtllDTVAGDELASDRKAISRQLHMAMHRAIETLPDEQREVF 164
108758181  88 WLYTIARNLCVDSARKESYRQASSLEApapg-aerDESRplgEGLPDAGASPERGAYNARLRPLLERALATLPDEQREVF 166
161610397  76 WLLQIAHNLLVDAHRRQPAPVAPE-----------QAEAalaSVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAM 144
33592354   76 WLLQIAHNLLVDAHRRQPAPVAPE-----------QAEAalaSVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAM 144
163857471 103 WLLQIAHNLIVDAYRRQPAQAGPQ-----------ETEAalaMLAAAEHEQPEQQLSDFQTRRRLQLAIESLPDEQRHAI 171
162454224  78 WAFAIARNVCIDHLRKMSLRRHPSLDQgsge-ggdGPTLgerTADPAPQAAVDRVAIGTEMGQRIVRAVEGLPHEQREVF 156
194365388  99 WLFRIAHNRLNDHWRAARHRPAAPADA--------DLRL----AAIEDGQTPEAELSEFEQRRRIQLAMEQLPPEQREVL 166
190573973 122 WLFRIAHNRLNDHWRAARHRPAAPADA--------DLRL----AAIEDGQTPEGELSEFEQRRRIQLAMEQLPPEQREVL 189
153003127  74 WLYAIARNLAVDEARRAAFRRAEPLD---------APGLagaAAYPAGDPAPDAAAEAALLRPKLEAALAALPDEQREVF 144
197120661  73 WLYAMARNLAVDESRRMAFRRASSLEA--------DPAA---CALAADDPAPDRAADAALVRPLLEAALASLPEAQREVF 141
262200030 165 LLREFQDLPFRDIGEIVGVPENTVKSRMRYALDKLRGELAEYKDLA 210
108758181 167 TLREYSGIPFKDIAEVTGVSENTVKSRMRYALDGLRRRLAEMGVDG 212
161610397 145 LLRLEHDLDVEEIAQVTGVSRETVKSRLRYATRRIREELSSESAPR 190
33592354  145 LLRLEHDLDVEEIAQVTGVSRETVKSRLRYATRRIREELSSESAPR 190
163857471 172 LLRLEHDLSLEDIADITGAPRETVKSRLRYATQRIREALNA----- 212
162454224 157 LLREIGHVPFKDIAHIVGVPENTVKSRMRYALERLQEALSEYEDYA 202
194365388 167 QLRLDQELSLEEIGQITGVGRETVKSRLRYAMDKLRAGLNA----- 207
190573973 190 QLRLDQELSLEEIGQITGVGRETVKSRLRYAMDKLRAGLNA----- 230
153003127 145 LLREYAGLRFAEIADVTGTPENTVKSRMRYALEGLREALAALGVGP 190
197120661 142 LLREHAGLRFPEIAEVTGAPEPTVKSRMRYALEALRERLAAMGVEP 187
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