4H7A,4TVX


Conserved Protein Domain Family
casB_cse2

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TIGR02548: casB_cse2 
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CRISPR type I-E/ECOLI-associated protein CasB/Cse2
CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.
Statistics
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PSSM-Id: 274193
Aligned: 17 rows
Threshold Bit Score: 86.7461
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4H7A_A        19 FLDWLKRLQGQKAWt----aARAAFRRSLAFPPGAYPRAMPYVEPFLAKGd--WRQEEREAHYLVAALYA---------- 82  Thermus thermop...
CAE13042      16 MFMSPKQLKEKGIIp-----APSTYRAQLKRCDSVEMAMLTEGFRALWLSl-pDEISLSDNPIKLEYWATma------va 83  Photorhabdus lu...
tigr:MCA0934  21 IGHLAATIAAEHFP--------TGDRAALRRLNPDAPPNLAFYRFAFRHLpqnWENRRTAWTALVAGIALmc-------- 84  Methylococcus c...
P76632        10 LYRAWQQLDNGS-------------CAQIRRVSEPDELRDIPAFYRLVQPf-gWENPRHQQALLRMVFCLsagknvirhq 75  Escherichia col...
AAR34762      10 LYQAWERLAPGP-------------RAELRRVERPDDLLEVPAFYRLFSGr--gTTEWEKGAYQRLIFCLpci----khs 70  Geobacter sulfu...
tigr:CT1973   15 FVEFVIGLCQRD----------KGAAAALRRADNPATEYQSWEYLAGFNId--LEKPFERIPYAAIAAAIara-----ka 77  Chlorobium tepi...
CAE50738      14 LHEVLCRREEKEYR---------QNRANLRRGADTTTEVYAFPYVYPQLPq-eATTQERLVLMRVAALAAefg-----ni 78  Corynebacterium...
WP_000935107  21 LLDWFATLSERYERkdgkrvNGRAWRAELKRMAPPYGVMICEGHDALRq---aLLKHMRLQPLDEMALALfvs-----va 92  Salmonella ente...
BAC75252      21 YTCWIEQICRDDPG------ARTALRSGLRRTLDDVPRMHRFVAPWLPHDr-qAPESEQRAYYAVAAMIAaqprt-thts 92  Streptomyces av...
4TVX_W        15 LYRAWQQLDNGS-------------CAQIRRVSEPDELRDIPAFYRLVQPf-gWENPRHQQALLRMVFCLsagknvirhq 80  Escherichia col...
4H7A_A        83 LKDGDHQVGRTLARALWEKAQg---------SASV--EKRFLALLEAD------------RDQIAFRLRQAVALVEGG-- 137 Thermus thermop...
CAE13042      84 LVHVKNNSDIKLAVAAGKKGGg---------NKPVvsELRFSQLQNAKt-----------PNELLRRLCRVLQQIKGN-- 141 Photorhabdus lu...
tigr:MCA0934  85 --pKPHRPDRSVGLTLAETGYs---------------EKRLERLLAAEg------------DTLHTLLLRAARFLAAKne 135 Methylococcus c...
P76632        76 DKKSEQTTGISLGRALANSGRi--------------nERRIFQLIRAD------------RTADMVQLRRLLTHAEPV-- 127 Escherichia col...
AAR34762      71 GEN------ISLGRALAKGRGv--------------gEKRLFQVVRSS------------EPNDMIQLRRILRMAEPT-- 116 Geobacter sulfu...
tigr:CT1973   78 ERNGSAGIGKAIAFCYEDRSKs------------DqaKARLRRLLACNs-----------VEEACRILRPLFSLIDSKaa 134 Chlorobium tepi...
CAE50738      79 PAVGSDTPAKSLGRWAYEVSRqrml---drqQQVAfnPKKLDVVGERLaylh-----tqdFEEAVRAVSRLMSIASSLsn 150 Corynebacterium...
WP_000935107  93 VHIKSHKENISFAAQLGEKLKg---------STSCvsGLRFERLQKASd-----------PETFCQLLIQAVKIRGTEg- 151 Salmonella ente...
BAC75252      93 PEAALEADGASQSPQPAPAPPygtslglafaLAVTasPGREREMRESTaesrlnlltrqsANGLHRHLPAAVGYLRELgv 172 Streptomyces av...
4TVX_W        81 DKKSEQTTGISLGRALANSGRi--------------nERRIFQLIRAD------------RTADMVQLRRLLTHAEPv-- 132 Escherichia col...
4H7A_A       138 ---IDFARLLDDLLRWFSPE---------R--------------HVQARWAREYYGA 168 Thermus thermophilus HB8
CAE13042     142 ---ISVLALARDIEEWFAEYeqlrpckadR--------------RIKVRWGMDYYRA 181 Photorhabdus luminescens subsp. laumon...
tigr:MCA0934 136 --sCNWTDFAHLLLDRNPEK-------------------------ARLKIARDYYRN 165 Methylococcus capsulatus str. Bath
P76632       128 ---LDWPLMARMLTWWGKRE--------------------------RQQLLEDFVLT 155 Escherichia coli K-12
AAR34762     117 ---VNWDLAARQLWYWNDRS--------------------------KRDLLEDYFLN 144 Geobacter sulfurreducens PCA
tigr:CT1973  135 -vtLDYAELLSQLLWFNDDS---------N--------------RIKTDWATDFYRH 167 Chlorobium tepidum TLS
CAE50738     151 vpaFDYIALYSLFSYWGNGIse-----ksQ--------------RVRMRVLQDYYGS 188 Corynebacterium diphtheriae
WP_000935107 152 ---VNVLSLADGIFLWMEEW---------QrrenhqpefrnpfeRSRIRWANEYLST 196 Salmonella enterica
BAC75252     173 --pIDWAQLLADLIAWPLHS---------G--------------RISRRWLQDYYRQ 204 Streptomyces avermitilis MA-4680 = NBR...
4TVX_W       133 ---LDWPLMARMLTWWGKRE--------------------------RQQLLEDFVLT 160 Escherichia coli K-12
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