Conserved Protein Domain Family
RbpA

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pfam13397: RbpA 
RNA polymerase-binding protein
RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.
Statistics
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PSSM-Id: 433174
Aligned: 49 rows
Threshold Bit Score: 108.05
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011691937    7 GFRGTRVGVAEGSapkiqpNDVVGERLPRIRVSYWCAKGHETRPVFIKL-PedQIPVVWDCRRCGGTASRDESRVelPHH 85  unclassified A...
jgi:Psed_3415   8 AIRGTRVGAGPMG------ESERGETAPRVRVAYFCATGHETRPSFAAD-A--EIPETWDCPRCGLPAGRDHTSPp-AAP 77 
jgi:Tbis_1989   6 AIRGSRVGAGPMG------EAERGEAAPRVRVSYWCANQHEVRPAFASD-A--PIPEIWDCPRCGLPAGRDRSNPp-APP 75 
CAQ02081        7 AIRGSRVGAGPMG------EQDRGFHAERISISYWDALGNETVRHFAANlPeeEIPVTIDSPQSGLPAGRDKANPp-SVA 79 
Q83MY3         29 S--GTEVGDGLSF------EIEDG----RICVTYWDQEGNKTVRYYASDvPldEIPRVITNPLNGLIAGCDYANPp-ESP 95  Tropheryma whi...
WP_014846133    6 AIRGSRVGAGPMG------EAERGDAAPRLHVSYYCASGHETRPAFAAD-A--VIPESWDCPRCGLPANTDAENPp-PPP 75  Arachnia
CBL57008        6 AIRGSRVGAGPMG------EAERGEVAPRIQVSYYCAHGHVTRPSFASE-A--AVPDDWECMKCGLPANRDPKNPp-PPP 75 
Q6A9J0          6 AIRGSRVGAGPMG------EAERGEAAPREYVSYFCANHHVIRPAFAAE-A--EIPDTWECPRCGLPANRDQANPp-APP 75  Cutibacterium ...
jgi:Namu_2804   6 PIRGSRVGAGRMG------ESDRGESAPRQRFEFYCANGHATALAFAMD-A--EIPDLWDCPRCGSPAGRDRAAPp-PAT 75 
WP_015785939    6 AIRGTRIGAGPSN------ETERGEAAPRRRVSYWCANGHESRPSFAMD-A--ETPEQWDCPRCGLPAGRDRENPp-AAP 75  Saccharomonosp...
WP_011691937   86 ADEGYKSHLEYVKERRSSQDAEDVLAGALERLR 118 unclassified Arthrobacter
jgi:Psed_3415  78 RNEPYKTHLAYVKERRSDADGAAILDEALSRLR 110
jgi:Tbis_1989  76 KNEPYKTHLAYVKERRSEEDGRQILAEALERLR 108
CAQ02081       80 KLEPYKTHLAYVKEHRSEEEASQLLEEALEQLR 112
Q83MY3         96 RSEPFKTHLAYVKERRSKEEGQKILEEALRELR 128 Tropheryma whipplei str. Twist
WP_014846133   76 KITPYKTHLAYVKERRTDAEAAQILEEAVSSLR 108 Arachnia
CBL57008       76 KTQLYKTHLAYVKERRSDKEAQAILSEALAHLK 108
Q6A9J0         76 KIVPYKTHLAYVKERRSEAEAAAILAEALENLR 108 Cutibacterium acnes
jgi:Namu_2804  76 KVEPYKSHLAYVKERRSDEDGEALLAEALARIe 108
WP_015785939   76 RTEPYKSHLAYVKERRSDADGEAILAEALERLR 108 Saccharomonospora viridis
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