Conserved Protein Domain Family
RRF_GI

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pfam12614: RRF_GI 
Ribosome recycling factor
This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Statistics
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PSSM-Id: 432670
Aligned: 8 rows
Threshold Bit Score: 212.675
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_007641767   2 NEDIIIALPSLIHRVGGETAKQAKAIALQYECELKRVRRSRNWNVTGDAIKVQTYALQLKAhqmisqklnKQGDgEFHYL 81  Paraglaciecola ...
Q087H4         2 TEDITIPLPSLIHRIGGEKAKQAKIIALQYDCELKRVRRSRNWRVIGEAVNIQSFTEQLKA---------QSDD-NFRYL 71  Shewanella frig...
Q8EIP5         2 HDDISIPLPSLIHRIGREAVKRAQAMALKHGCELKRVRRSRNWSITGQAIAIQSCCGELKA---------QSDAaEFAFM 72  Shewanella onei...
Q87J76         3 ETKITISLPSLIHRIGGDHAKRAKTLAAEKQCDLKRIRRSRNWQISGEALDVKAFLDHLKS---------EEAE-VMRFA 72  Vibrio parahaem...
Q6LS99         3 DKTITTLLPSLIHRMGSDNTKKAKLVALECDCEIKRIRRSRNWQVVGDEHSFKKLSERLRL---------SEPE-AMQFL 72  Photobacterium ...
Q9KRJ8         5 DQAIAITLPSLIHRIGSDTVKRLKLQAQTFDCELKRIRRSRNWQLLGEAASMQKFVIQIKQ---------TEYQ-VAEYL 74  Vibrio cholerae
WP_013052787   2 NEDITISLPSLIHRIGREEVNQAKAIAVQYQCELKRVRRSRNWGLSGEAIKIQSYSAGLKAel------lKREA-GFRYL 74  Shewanella viol...
Q12K07         2 NEDINISLPALIHRIGGAQTKQAKIIATQYHCELKRVRRSRNWLLVGGAKAVQSFNAELKT---------QDTQ-GFRHL 71  Shewanella deni...
WP_007641767  82 IKKIETALLGHADKLETLEAKLIRLITQIPSITLSKLVLLTHCTEAEARVARFEAE 137 Paraglaciecola psychrophila
Q087H4        72 IRKIETALLGHADKLEPLDEKLVRLIKQTPGITLGELIQLTQCTLTEARVARFNVD 127 Shewanella frigidimarina NCIMB 400
Q8EIP5        73 IKKIDTALLQHADKLEPLSAKLIRLINQNPAITLGELMQQTQCSITEARLARFEAE 128 Shewanella oneidensis
Q87J76        73 INKIEQALLAHQDKLEPLDVKLIRLVRQNPNITLAELMAETNCTLVQARTARFDAE 128 Vibrio parahaemolyticus
Q6LS99        73 IRKIDERLTTYNDKLERIEDKLKRLVIQNSNITLAELMQITNCSITEARFARFDAD 128 Photobacterium profundum
Q9KRJ8        75 IRRVEAGLRLPSDKIEPIEVQLQRLVQQNPSITLAELMAATHCSLMQARAARFAEE 130 Vibrio cholerae
WP_013052787  75 IQKIETALLDHADKLEPLEAKLARLLTDNPNITLAELIHITDCTLAEARTARFHAD 130 Shewanella violacea
Q12K07        72 IQKLDSALLNHSDKLEPLAEKLARMIAAKPNITLGELMQASECSLAEARLARFNED 127 Shewanella denitrificans OS217
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