Conserved Protein Domain Family
radc
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TIGR00608: radc 
DNA repair protein radc
The genes in this family for which the functions are known have an as yet porrly defined role in determining sensitivity to DNA damaging agents such as UV irradiation. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Links
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Statistics
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PSSM-Id: 273171
Aligned: 6 rows
Threshold Bit Score: 293.191
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
P52601    15 RPREKLLKYGAKHLGNAELIAILLATGQgKGkLSAVGLGQYILQqlgqnRQDPMDVLRNIHPQELIAFPGIGPAKATTIL 94  Synechocystis sp. P...
Q02170    18 KPRERLLKVGAENLANHELLAILLRTGT-KH-ESVLDLSNRLLR-----SFDGLRLLKEASVEELSSIPGIGMVKAIQIL 90  Bacillus subtilis s...
O67541    23 RPREKLLKLGPENLSDEELLAVILGSGS-KG-ADVLSLSKELIKmg-weELEK----KSV--EELLKVRGLGLVKALQVK 93  Aquifex aeolicus VF5
P44952     8 MPREKLLAFGAKALSDYELLAIFLRTGIkGC--PVMSLSKNVLThf-----gPLHALLSADKKAFCSVKGLGITQFIQLQ 80  Haemophilus influen...
P72255     1 MLRERFLTGGAEAMPDYELLELILFRALpRQ--DVKPLARRLLDvf-----gSFGHVLAAPPARLTEVTGVGEAVVQELK 73  Rhodobacter capsulatus
AAA61991  11 MPREKMLKFGISALTDVELLALFLRTGTrGK--DVLTLAKEMLEnf-----gSLYGLLTSEYEQFSGVHGIGVAKFAQLK 83  Escherichia coli

P52601    95 AAVELGKRVFQSRPLEKMVVDSPEAAAIALSQDLMWQTQEHFAIVMLDVKNRLLATKVITIGTATETLIHPREIFREVIK 174 Synechocystis sp. P...
Q02170    91 AAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEAFK 170 Bacillus subtilis s...
O67541    94 ALVELSKRFKGGK--SRISIRNPQEAFEFL-KDKFDERRESLIALYLDLSNRLLDWEVVAIGNVNTVFSKPKDILFKAVK 170 Aquifex aeolicus VF5
P44952    81 AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTIYVSAVYPREIIKEALY 160 Haemophilus influen...
P72255    74 IVEAAAQRLARSRVLQRPVLSSWQALLDYCHTAMAHRPTEQFRVLFLDRKNLLIADEEQARGTVDHVPVYPREVVKRALE 153 Rhodobacter capsulatus
AAA61991  84 GIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAIK 163 Escherichia coli

P52601   175 QGATRLIVAHNHPSGglEPSP--EDIRLTEFLLQGAQYLQIPVLDHLILGHGKHQSLRQCTDL 235 Synechocystis sp. PCC 6803 substr. K...
Q02170   171 RSAASFICVHNHPSG--DPTPsrEDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL 231 Bacillus subtilis subsp. subtilis st...
O67541   171 LSANGIIIAHNHPQG--EPSPsnEDLNFTERLKKACELLGFELLDHLILSEGRYFSFREEGVL 231 Aquifex aeolicus VF5
P44952   161 CNAAALILAHNHPSG--ITEPsySDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL 221 Haemophilus influenzae Rd KW20
P72255   154 LDASALILVHNHPSG--DPTPsqADIAMTDQIRHAAEALGLVLHDHLVIGKGRELSFRAEGLL 214 Rhodobacter capsulatus
AAA61991 164 INASALILAHNHPSG--CAEPskADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI 224 Escherichia coli
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