1GBG,1GBG,1GLH,1U0A,1MAC,2UWA,2UWC,2VH9,2UWB,1UN1,1UMZ,1O4Y,1URX,1O4Z,1DYP,1UPS,2W39,2W52,2CL2,3DGT,2VY0,2HYK


Conserved Protein Domain Family
Glyco_hydrolase_16

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cd00413: Glyco_hydrolase_16 
Click on image for an interactive view with Cn3D
glycosyl hydrolase family 16
The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Statistics
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PSSM-Id: 185683
Aligned: 85 rows
Threshold Bit Score: 55.5196
Created: 27-Oct-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2VH9; Tropaeolum majus endo-xyloglucanase with oligosaccharide bound to donor subsites, contact 4A
  • Structure:1UMZ; Populus tremula xyloglucan endotransglycosylase with xyloglucan nonasaccharide bound bound to acceptor subsite, contact 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1GBG           8 EPFNnyn---------tgLWQKadgysngnmfnctwranNVSMts----lgEMRLSLTspsy------------nkfDCG 62  Bacillus lichen...
2VH9_A        41 LGFDq-------------GYTNlwg------------pqHQRVdq-----gSLTIWLDs-----------------tSGS 73  nasturtium
1O4Z_A        67 DNFEyeapadnkgsefleKWDDfyhnawagpgltewkrdRSYVad-----gELKMWATrkpg-----------sdkiNMG 130 Zobellia galact...
1UPS_A        36 DEFNgptl-------dreKWTDyylphwck--dpesakaNYRFen-----gSLVEYITedqkpwc-----pehdgtvRSS 96  Clostridium per...
ZP_03835009   23 DEFNgpd--------ldpRWCPyyqasw-----gdldasRTRYrfitesdgTVSLELYvdnagqgywqpwrasnntyKVA 89  Citrobacter sp....
ZP_02638136  264 DNFDgekl-------desKWVNsyltswa----snpekaKPVYkmk---dgKLSLILNedtepwc-----pefdgdtRVT 324 Clostridium per...
ZP_02030249   44 DEFEgkei-------drtKWIPeylpswp----kdrtvcTPTYemk---dgVVRLTIDrdskne--------fdkgmYIS 101 Parabacteroides...
ZP_04605201   25 EDFTgeql-------dtaRWIPyylpqw-----straaaAARHrvs---ggNLSLRIEsdqppwa-----paldgpmRVS 84  Micromonospora ...
YP_001546762  23 DEFAteql-------dqaKWLPyylpqw-----ssrersTPRYhla---nqRLILEIQadqapwc-----pefdaqtRCS 82  Herpetosiphon a...
YP_002787667  46 EEFEgatl-------sehRWLPfylphw-----sareksSARYtlp---gkGLHLHIErdqepwl-----pdidgalRVS 105 Deinococcus des...
Feature 1                                                                 # # #                  
1GBG          63 ENRS----------------------------VQTYGy--GLYEVNMKPAkn--vGIVSSFFTYTgptd------gtpwD 104 Bacillus lichen...
2VH9_A        74 GFKS----------------------------INRYRs--GYFGANIKLQsgytaGVITSFYLSNnqdy------pgkhD 117 nasturtium
1O4Z_A       131 CITS----------------------------KTRVVy-pVYIEARAKVMn---sTLASDVWLLSad----------dtQ 168 Zobellia galact...
1UPS_A        97 AIMSfdkswihnfsg------ttdnhernewrGYTTKy--GYFEIRAKLSnt-ggGGHQAWWMVGmqddtndwfnskqtG 167 Clostridium per...
ZP_03835009   90 GITGgtrdymnmwpsg----gfpitnhmpyydAFATRy--GYFEIRTRFLng--sGLAPAFWFLGmqdav-----ytenM 156 Citrobacter sp....
ZP_02638136  325 GFMTgdrsglhnwtg------nntvlnpteknITNINk-yGYYEMRAKMQvg--gGMHTAWWMTGfedk------peqsA 389 Clostridium per...
ZP_02030249  102 GFMSasrtgmhhydp------krkalhsikteATQINq-yGYYEMRAKMQag--gGVHCAWWLIGfedd------pnqsC 166 Parabacteroides...
ZP_04605201   85 SLQTglfsgpvgsdigqhgthpaarvsqawenRRLYTphyGVVEMRARAIad--pRCMVALWMIGyeev------peqsA 156 Micromonospora ...
YP_001546762  83 SLQTgvfsgalgspdgqhrfnqacvvrelqdsIRTYTpqyGYFEMRAKATig--pNNVVALWMIGfedq------peysG 154 Herpetosiphon a...
YP_002787667 106 CLQTgsfsgpvgscigqhrfhpdlrvreeqptLQLYAplyGYFETRFQAVpi--pGYMVALWMIGvetq------phesG 177 Deinococcus des...
Feature 1        # #  #                     # #                     #                            
1GBG         105 EIDI-EFLGkd------------ttKVQFNYYtngv----------gnheKIVnlgfd-----aansYHTYAFDWqp-nS 155 Bacillus lichen...
2VH9_A       118 EIDI-EFLGtipg---------kpyTLQTNVFiegs----------gdreMRIhlwfd-----ptqdYHNYAIYWtp-sE 171 nasturtium
1O4Z_A       169 EIDIlEAYGadysesagkdhsyfskKVHISHHvfirdpfq--dyqpkdagSWFedgtv-----wnkeFHRFGVYWrdpwH 241 Zobellia galact...
1UPS_A       168 EIDIlETFFsk------------kdTWRIAAYgwndpnf-----qtswtiSEDkvpsg----dptseYHIYAMEWtp-tA 225 Clostridium per...
ZP_03835009  157 EVDSpEVFTle-------------nVVKFNLLprqgeasq---slvtaygEGAtlpd------lddgYHIYGLEWdp-eY 213 Citrobacter sp....
ZP_02638136  390 EVDIfEILGrn------------pnEIQSTKHawkd-----------pniKKEhlsftpknvdlaneFHNYGLKWtp-eE 445 Clostridium per...
ZP_02030249  167 EIDIfEILGtd------------vnRIWSTVHswkds---------tiqyHTEhpwfan--kklaeeFHVYGFDWtp-eG 222 Parabacteroides...
ZP_04605201  157 EICIaEIFGr---------------DVKLDSTaigmgihpfddpalhddfAQVevpi------dacrFHTYTMEWtp-eR 214 Micromonospora ...
YP_001546762 155 ELAImEIKGw--------------nIGATGLKlgygvhpwg-dsqltdefFEDevai------kvsdYHIYAAEWtp-sQ 212 Herpetosiphon a...
YP_002787667 178 EICIcEVFGqdmt--------aetaQVRYGVHpfgdt---------slydEFYtetfq----mdasqFHTYAVDWkp-dS 235 Deinococcus des...
Feature 1                                                         # #                            
1GBG         156 IKWYVDGQLKHTAttq-----------------------ipqTPGKIMMNLWNGagvdewl------------gsyngvt 200 Bacillus lichen...
2VH9_A       172 IIFFVDDVPIRRYprksd-------------------atfplRPLWVYGSVWDAsswatengk---------ykadyryq 223 nasturtium
1O4Z_A       242 LEYYIDGVLVRTVsgkdiidpkhftnttdpgnteidtrtglnKEMDIIINTEDQtwrsspasglqsntytptdnelsnie 321 Zobellia galact...
1UPS_A       226 LKFYYDNELFKVIygs------------------------pdYEMGTILNIYTDagsga----------------hndvw 265 Clostridium per...
ZP_03835009  214 LKLYIDGQLVSTIesa------------------------idYRMFPLISLNHHetnnaevgni-------ydndpplpn 262 Citrobacter sp....
ZP_02638136  446 MIFYFDGQEYGRMksd------------------------idYPMTMLISFYEKrgpswtgp-----------fdpsipy 490 Clostridium per...
ZP_02030249  223 VTVYVDGIQVMTHkat------------------------itYPLVQIISFYDNrkakngwtg---------tydpsvpy 269 Parabacteroides...
ZP_04605201  215 VSFFIDGHHQRSLrqs------------------------pnYPMQLMLNIYEFpddcre---------------patay 255 Micromonospora ...
YP_001546762 213 IDIYLDNRKLRTIqqs------------------------pnYPMQFMLGMYDLplrqp----------------ttaqy 252 Herpetosiphon a...
YP_002787667 236 LTFFVDGVAVRTIhqs------------------------psYPMQFMLTLYELphqltea-------------svdapw 278 Deinococcus des...
Feature 1                    
1GBG         201 PLYAHYNWVRYT 212 Bacillus licheniformis
2VH9_A       224 PFVGKYEDFKLG 235 nasturtium
1O4Z_A       322 NNTFGVDWIRIY 333 Zobellia galactanivorans
1UPS_A       266 PKEWAIDYMRVW 277 Clostridium perfringens
ZP_03835009  263 DETFTIDYYRVF 274 Citrobacter sp. ATCC 29220
ZP_02638136  491 PKTFDIDYVRIY 502 Clostridium perfringens CPE str. F4969
ZP_02030249  270 PKSFDIDYIRMY 281 Parabacteroides merdae ATCC 43184
ZP_04605201  256 PKEFIVEYVRGY 267 Micromonospora sp. ATCC 39149
YP_001546762 253 PQQFEIDYVRGY 264 Herpetosiphon aurantiacus ATCC 23779
YP_002787667 279 PRTAHIDYVRGY 290 Deinococcus deserti VCD115

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