Conserved Protein Domain Family
Xnuc_lig_assoc

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TIGR04122: Xnuc_lig_assoc 
putative exonuclease, DNA ligase-associated
Members of this protein family frequently are found annotated as a putative exonuclease involved in mRNA processing. This protein is found, exclusively in bacteria, associated with three other proteins: an ATP-dependent DNA ligase, a helicase, and putative phosphoesterase.
Statistics
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PSSM-Id: 274995
Aligned: 34 rows
Threshold Bit Score: 507.127
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_01016251    6 LLHPTPAGLYCAPGDFYIDPVAPVDRAVITHGHADHARSGHGSVIATEETLAIMAVRYGEEftARRTALAYGETTNVNGV 85  Parvularcula be...
ZP_01086322    8 LIQLTPQGLYCPAAGAWIDPWRPVAKALITHAHADHARSGCGSYWAVGSGEAVLRQRLGAG--ITLTNVDYGAELRIGEA 85  Synechococcus s...
ZP_05035133    3 LITVRPEGLYCEVGNFYIDPWKPVDTALITHAHADHAYTGHQTYYATAISEGILRRRLGKD--INLCGVNYGHRIKIGPT 80  Synechococcus s...
ZP_01053651    3 FIKFTKKGIYCIPGKFYLDPWYPVDYAIISHGHADHARWGNKHYLCHNDSKAILKHRIGQD--ISIESMGYNEPKTINDV 80  Polaribacter sp...
WP_011586863   2 LLKFDPYGIYCPQADVYIDPWRPVKNAIITHAHSDHAKWGNEKYLSHHLSVPVLKFRLGEN--IHVRGVEYGEEILMNGV 79  Cytophaga hutch...
WP_015812790  20 LLQFTGKSIYCAVADVHIDPWIPVGRAIITHAHSDHARWGSRHYLAHQDSEPILRLRLGQD--INLQTVQYGEKFMINGA 97  Dyadobacter fer...
WP_012794420   2 VLQFTDKGIYCPAGDFYIDPWQPVERAVITHAHSDHARYGSKHYLCQHDSVYLLQLRLGQD--ISVQGVAFGEVVRYNGV 79  Chitinophaga pi...
WP_015808377   3 LISFTNKGVYCKQGDFYIDPWRPVNLAVTTHGHSDHVKWGSNAYLCHELTSPILKQRLGE---LNIETLPYGKEISINGV 79  Pedobacter hepa...
WP_012023830   5 LLAFNDKGIYCQQADVYLDPWRPVKNAIITHGHSDHARWGHQNYITHHTNIPIIRHRLGE---INVTGKEWGETFVINNV 81  Flavobacterium ...
WP_011556022  22 LMTVTPQGLYCVPGGFHVDPWRPVDRALITHAHGDHARSGSHRYLGARAGKGLLHRRLGAD--ATIDTLDYGERLRINGV 99  Myxococcus xanthus
ZP_01016251   86 GLWLAPAGHVLGSAQAVIEFGGLRMVVTGDYKRRRDPTCPAFEVVSCHIFISEATFALPVFHHPDTGGEVRKLLASQQQF 165 Parvularcula be...
ZP_01086322   86 VVSFHSAGHVLGSAQVRITVGGETWLISGDYKRDADPSCAPFEPVSADVFITEATFGLPIYRWRPGREVAADILSWWKGA 165 Synechococcus s...
ZP_05035133   81 WVSFHSAGHVLGSAQVRVEYKDEVWVASGDYKRGIDPSCDPFEVVECDTFITEATFGLPIYHWDSGEITTEQIYRWWQSD 160 Synechococcus s...
ZP_01053651   81 KVSFYPAGHIIGSAQIRLEYKGYVIVFSGDYKTQPDFLTVPFEPVKCNEFITESTFGLPIYKWKSELELQNELQNWVLQN 160 Polaribacter sp...
WP_011586863  80 KISLHPAGHIPGSAQIRLEYKGEIWVASGDYKLQQDQVSAAFEPVRCQHFVTESTFGLPVYRFPQAEDTHADINTWWQKN 159 Cytophaga hutch...
WP_015812790  98 KFSLHPAGHIIGSAQVRVEYQGEVWVASGDYKLEDDHFATPFEPVKCNVFITESTFGLPIYKWQPQQQVMSEIDDWWAQN 177 Dyadobacter fer...
WP_012794420  80 SISLHPAGHIIGSAQVRVQQGNEVWVFSGDYKVENDGISGQFEPVPCNTFITECTFGLPIYNWQPQAVIFSNIRQWVQDN 159 Chitinophaga pi...
WP_015808377  80 KISLFPAGHVIGSAQVRLEYKGEVCVVSGDYKVTDDGISTAFEPVKCNTFVSESTFGLPIYKWQPQQLILDQIREWISGN 159 Pedobacter hepa...
WP_012023830  82 KFSLHPAGHIIGSSQIRVEHKGEVWVFTGDYKTEDDGISTPYEVVKCDTFITECTFGLPAFNWTPQAEVISEINNWWAEN 161 Flavobacterium ...
WP_011556022 100 TVSFHPAGHVLGSAQLRVEHGGETWVVSGDYKRAPDPTCTPFEVVPCHTFITEATFGLPIFRWDATEQVAEDILRWWDTN 179 Myxococcus xanthus
ZP_01016251  166 PE--RTHLVGAYALGKAQRVIRHLREEgYDrPIFIHGALDRLCTLYESFGVNLSPLLPAtlkDSSGEKTDFSGEIVICPP 243 Parvularcula be...
ZP_01086322  166 PE--RPSLLFAYAFGKAQRLLAELAALgVDeEVLLHGAVQTLMPAYRQQGITMVPTRPV---SELPRSESLAGKLVIAPP 240 Synechococcus s...
ZP_05035133  161 LT--RPSLLFCYAFGKSQRVLAELTKF-TDrPVYLHGAVHNLTEIYREVGIDMVPTIPV---SSMEKSYKFIGDLVIAPP 234 Synechococcus s...
ZP_01053651  161 QQnnRTSVFIGYSLGKAQRIMKLVEG--VD-DIFVHSAINNLNKAISNSGINIPNTTLI---TPDFNKKEIQNKIVILPP 234 Polaribacter sp...
WP_011586863 160 KEegKASVIIGYALGKAQRIIKHLDPA-IG-TIYTHGAVDNLNRVLTQCGLELPPTIRV---EGETNKSLFKGNIIVAPP 234 Cytophaga hutch...
WP_015812790 178 RAdgKTSVLMGYSLGKMQRILKNIQLQ-DDv-LYAHGAIYTVNERLREAGFDLPELTLV---TKETDRKLFRGALVLAPP 252 Dyadobacter fer...
WP_012794420 160 QAagKNSVILGYSLGKAQRLLYHLRDV-Te-QIWAHGAIYIPHQLLREKGWDLPEIHRI---TPETPTAAYKNNLIIGPP 234 Chitinophaga pi...
WP_015808377 160 QDkqKTSVLVAYSLGKAQRLVAGLAGYr---PVYVHNSIANLNDAFKTAGVNLPETIRV---TAETSKEELQKGIVIVPP 233 Pedobacter hepa...
WP_012023830 162 KAegRTSILFGYSLGKAQRLLKYLDTD-IGk-IYTHGAIENMTNVLRPM-VYFPPTELI---TRETKREALLGNIVLAPP 235 Flavobacterium ...
WP_011556022 180 RAlgRAAVLFCYALGKAQRLLAELAKL-TDrTVFVHGALHSLVDVYRNAGVRMLPTHRV---SEVEKGTSFAGALVLAPP 255 Myxococcus xanthus
ZP_01016251  244 AAIQSTWARRFPDPVPCFASGWMRIRQRAKQRGVELPLIISDHADWGELTDTVEAVDPDELWVTHGREDALIRWAEL-RG 322 Parvularcula be...
ZP_01086322  241 SAHRSVWMKRFKDPQTAFVSGWMAVRGARRRRGFERGFTLSDHADWDGLLNTVKKTGARQVYVTHGNSDGLARYLRDvES 320 Synechococcus s...
ZP_05035133  235 SGHRSTWMKRFKQPQTAFASGWMAVRGNRRRRGYERGFVLSDHADWPGLIQTIEQTKAKTVYVTHGQNDVLARYLVEkKA 314 Synechococcus s...
ZP_01053651  235 ALLGSKMLKRIPNAATAICSGWMHIRGNRRWKGVDAGFAVSDHADWDGLLEAVKATEAEKVYVTHGSQAVFSKYLNE-IG 313 Polaribacter sp...
WP_011586863 235 SAIGTPWLKRFDPFSVAICSGWMQLRGTRRRKSADRGFVLSDHADWEGLNTAVKETGAENVYVTHGYKSVFAKWLRE-ES 313 Cytophaga hutch...
WP_015812790 253 SADGTTWIKKFAPYSVGYCSGWMALRGAKNRRAVDQGFVLSDHVDWPDLNRAVKETGAEKVYVTHGYTSIYSRWLNE-NG 331 Dyadobacter fer...
WP_012794420 235 SAADTSWMRRFNPYALGVCSGWMQVRGNMRRRNADAGFALSDHADWTGLLQAVRATGAEKVYTTHGFSSAFARYLTE-NG 313 Chitinophaga pi...
WP_015808377 234 ALAEGRWIKTLSNAATGVCSGWMQVRAGRRWRSADAGFALSDHADWPGLLSAIKATEAEKVFVTHGYSATFAKYLNE-IG 312 Pedobacter hepa...
WP_012023830 236 SAHGSIWIRKMTPFVTGSASGWMAFRGARRRRAIDKGFVLSDHCDWHSLLESVKATGAERVICTHGYTDIFAKYLRE-LG 314 Flavobacterium ...
WP_011556022 256 SASGTTWMRRFGEHETGFASGWMRVRGNRRRRGFDRGFVLSDHADWPDLLRTVKDTRAERVLVTHGYAEPLAHYLRE-QG 334 Myxococcus xanthus
ZP_01016251  323 -RVARPLHLIgYEDD 336 Parvularcula bermudensis HTCC2503
ZP_01086322  321 -INAAPLGRA-FEGE 333 Synechococcus sp. WH 5701
ZP_05035133  315 -IQASPLETL-FEGE 327 Synechococcus sp. PCC 7335
ZP_01053651  314 -IEAHELKTE-FGED 326 Polaribacter sp. MED152
WP_011586863 314 kLNAVEVDTL-YEGE 327 Cytophaga hutchinsonii
WP_015812790 332 -IEAAEVTTM-YGne 344 Dyadobacter fermentans
WP_012794420 314 -IPAQEVKTE-YGDt 326 Chitinophaga pinensis
WP_015808377 313 -IEAEEVKTQ-YGNE 325 Pedobacter heparinus
WP_012023830 315 -YDARTEKTQ-YEGE 327 Flavobacterium johnsoniae
WP_011556022 335 -VDAAPLATP-FEGE 347 Myxococcus xanthus
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