Conserved Protein Domain Family
secD

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TIGR01129: secD 
protein-export membrane protein SecD
Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Statistics
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PSSM-Id: 273456
Aligned: 15 rows
Threshold Bit Score: 346.197
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P44591       123 WGLDLRGGVRFLMEVDMNATlvkrqeqlqdslrgelrkekiqytaikntehfgtlitlanvsqrakaeriirqlhptldi 202 Haemophilus inf...
O67102        35 LGLDLKGGVEFLLEPDFSVAiereyedlarnlreklskfnvlevyatkegvi----ielldkkevenikkviqdinpnvi 110 Aquifex aeolicu...
O26074        36 LGLDLRGGLNMLLGVQTDEAlknkylslasaleynakkqnillkdiksnlegisfelldedeakkldalllelqghsqfe 115 Helicobacter py...
Q55610        29 LGLDLRGGAQLTIEVQPT-------------------------------------------------------------- 46  Synechocystis s...
Q9ZG86        47 LGLDLSGGSRLILQVQN--------------------------------------------------------------- 63  Brucella melite...
O83425       145 LGLDLSGGTSVVIKADLSe------------------------------------------------------------- 163 Treponema palli...
AAC31122      33 LGLDLQGGFEVLYDVQP--------------------------------------------------------------- 49  Bacillus subtil...
Q50634        40 LGIDLQGGTRVTLTARTPDG------------------------------------------------------------ 59  Mycobacterium t...
WP_010889789 138 LGLDLSGGMSVTISLDYSS------------------------------------------------------------- 156 Lyme disease sp...
WP_004080746  36 LGLDIKGGARIEYMVEVQQG------------------------------------------------------------ 55  Thermotoga
P44591       203 tepdadsINLGLSTAALNEARDLAIEQNLTILRKRVAELGVAEA-VIQ---RQGAERIVIELPGV---QDTARAKEILGA 275 Haemophilus inf...
O67102       111 feeegdkLVVKFTQKYVEQLKEDIVRQSIEIIRDRIDKLGVTQP-VVT---RVGKYRILVDLPGF---LDVERAKKIIGS 183 Aquifex aeolicu...
O26074       116 ikkeagfYSVNLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEP-VVI---QQGKEEISVQLPGIktlEEERRAKDLISR 191 Helicobacter py...
Q55610        47 --------------KEIPQIDNDSLVAVKTVIENRVNALGVSEP-LVQ---TAGEDKIVVQLPGV---TDPGQAERILGG 105 Synechocystis s...
Q9ZG86        64 -------------------AGKTDLETTANIMRQRLEELGYGNP-VVE---GEGRNQIRVEVPGL---YDAQLLKDILTI 117 Brucella melite...
O83425       164 -------VTKGVPDAERAAIRSEAMALVLSTLENRINRFGLSEP-VIR---RQGEDRVYVEIPGL---TDRDRVHSIVMG 229 Treponema palli...
AAC31122      50 -------------VKKGDKITKDVLVSTVEALNRRANVLGVSEP-NIQ---IEGNNRIRVQLAGV---TNQNRAREILAT 109 Bacillus subtil...
Q50634        60 -----------------SAPSREALAQAQQIISARVNGLGVSGS-EVV---VDG-DNLVITVPG----NDGSEARN-LGQ 112 Mycobacterium t...
WP_010889789 157 -------VEKKLGRSLTFAEREDAIYRIMQILKDRVBRFGLTEPkIVR---EAGGNKIFLDIPGE---KDESRVSTLLSG 223 Lyme disease sp...
WP_004080746  56 -------TENP----------SDVVDDVWTVLRNRLDAAGYTEA-AVKkvlRDNKYYIVVEIPGA---TDTVQAEKLIGS 114 Thermotoga
P44591       276 TATLEFRIVNQN-VT----------------------------------------------------------------- 289 Haemophilus inf...
O67102       184 TASLELKLVIDVsTDrk--------------------------------------------------------------- 200 Aquifex aeolicu...
O26074       192 SAHLQMMAVDEEhNK----------------------------------------------------------------- 206 Helicobacter py...
Q55610       106 TAQLEFQQQRPGtEGef--------------------------------------------------------------- 122 Synechocystis s...
Q9ZG86       118 RGNLSFRAMDDT-MS----------------------------------------------------------------- 131 Brucella melite...
O83425       230 RGVLAFHLVDDDaTQklldhyrnnp------------------------------------------------------- 254 Treponema palli...
AAC31122     110 EAQLSFRDANDK-------------------------------------------------------------------- 121 Bacillus subtil...
Q50634       113 TARLYIRPVLNSmPAqpaaeepqpapsaepqppgqpaapppaqsgapaspqpgaqprpypqdpapspnptspaspppapp 192 Mycobacterium t...
WP_010889789 224 KGNLTFYVVDDEsTSllhrkilea-------------------------------------------------------- 247 Lyme disease sp...
WP_004080746 115 TGVLYFAQVLDEyLGedp-------------------------------------------------------------- 132 Thermotoga
P44591       290 -------------------------------------------ADAISRNMLPA--DSEVKYDRQGHP------VALFKR 318 Haemophilus inf...
O67102       201 ------------------------------------------eLEKKLTPDRE------ILPSRDGREw-----FLVEKA 227 Aquifex aeolicu...
O26074       207 -------------------------------------------DAMKMTDLEAQklGSVLLSDVEMGGk-----ILLKAI 238 Helicobacter py...
Q55610       123 ------------------------------------------qAEYSIKRQLDAelENLRRSGASPENsdr-leELIKAK 159 Synechocystis s...
Q9ZG86       132 -------------------------------------------PDDAIRGTPPA--DSEIVYSFDDPPv----gYLLKKT 162 Brucella melite...
O83425       255 ---------------------------------qgtfdaahqlHDLSLVPEHTSvlGVYRKDSYGLDVrd--gfLVVKKE 299 Treponema palli...
AAC31122     122 -------------------------------------------ELLNGADLVENg-AKQTYDSTTNEP------IVTIKL 151 Bacillus subtil...
Q50634       193 aeapatdprkdlaeriaqekklrqstnqymqmvalqfqatrceSDDILAGNDD---PKLPLVTCSTDHkt---aYLLAPS 266 Mycobacterium t...
WP_010889789 248 ----------------------------------gslfsipeiQASMNLPDSKQifPWYVKDSYGVDDessvryYVVDAS 293 Lyme disease sp...
WP_004080746 133 ----------------------------------------skvPELSLEARREN--A-VWLKGRDGKW------YLVKKE 163 Thermotoga
P44591       319 A-------------VLGGEHIINSSSGLDQHSsTP--QVSVTLDSEGGEIMSQTTKKYY--------K--KPMATLYVEY 373 Haemophilus inf...
O67102       228 P-------------VITGQDLKTAYVGVDN-LgQP--AVNFELKGEAAEKFGKFTEQNI--------G--KRLAIVLDRK 281 Aquifex aeolicu...
O26074       239 P-------------ILDGEMLTDAKVVYDQNN-QP--VVSFTLDAQGAKIFGDFSGANV--------G--KRMAIVLDNK 292 Helicobacter py...
Q55610       160 EesnkallalfepmGLTGKNLTDARPSPNQSG-TAw-EVALRFDEEGGQKFAELTQAVA--------GtgRSLGVFLDND 229 Synechocystis s...
Q9ZG86       163 P-------------ILTGHDITDAKASISADDgQP--VITLTLDDNGRRRLADLTAQGN--------E--NSFAIVVDNQ 217 Brucella melite...
O83425       300 P-------------ALEGRHIRDATVSSG-RAnEP--LVLFDLDHEGARIFSELTTKEI--------G--RRLAIVSDGK 353 Treponema palli...
AAC31122     152 K---------------DADKFGEVTKKVMKMApNN--QLVIWLDYDKGDSFKKEVQKEH--------Pk----------- 195 Bacillus subtil...
Q50634       267 I--------------ISGDQIQNATSGMD-QRgIGy-VVDLQFKGPAANIWADYTAAHI--------Gtq--tAFTLDSQ 320 Mycobacterium t...
WP_010889789 294 Pe-----------nSFDGAHIKDAGVSNDPRTgRD--TVAFSLDVDGSEKFFKFTQKNV--------G--KSLAVVMEGK 350 Lyme disease sp...
WP_004080746 164 Imgr-------kdlVLEAPRIVYARPEVETRTgRYgyKVSFELAKEYVDIFKKITQALYvpegtydpK--KRLAIVLDDV 234 Thermotoga
P44591       374 kdngkkdengktilekheeVINVATIQGRFG-SNF-----QITG---VDSIAEAHNLSTLLKSGALIAPIQIVEERTIGP 444 Haemophilus inf...
O67102       282 -------------------VVSAPVIRSKISd-RG-----QITG---NFTAQEARDLALILRTGSLPSPLKFLQEKIVGP 333 Aquifex aeolicu...
O26074       293 -------------------VYSAPVIRERIGgGSG-----QISG---NFSVAQASDLAIALRSGAMSAPIQVLEKRIIGP 345 Helicobacter py...
Q55610       230 -------------------LISAPVVGVEFAnTGItggaaVITG---NFTIDTANDLAVQLRGGSLPFPVEVVENRTVGA 287 Synechocystis s...
Q9ZG86       218 -------------------VVSAPTVSGPLDtSEL-----QIEG---AFDLQAANNMAVVLRSGALPQAVTVLEERTIAS 270 Brucella melite...
O83425       354 -------------------IRSAPAIREPITaGSG-----SISG----FSAEEAQNLKTALRSAWLNVALEIENQQVVGA 405 Treponema palli...
AAC31122     196 -------------------FVSAPNVSQELNtTDV-----KIEG---HFTAQEAKDLASILNAGALPVKLTEKYSTSVGA 248 Bacillus subtil...
Q50634       321 -------------------VVSAPQIQEAIPgGRT-----QISGgdpPFTAATARQLANVLKYGSLPLSFEPSEAQTVSA 376 Mycobacterium t...
WP_010889789 351 -------------------IKSVAGIGYAITgGNV-----SIQGd--SFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGP 404 Lyme disease sp...
WP_004080746 235 -------------------VQFVGQVVAIITdGKA-----EITG---NFSLEEAKQLAAILRSGALPARLVKTSSGWVAP 287 Thermotoga
P44591       445 SLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIASFALVI-N---IVLLVGLMSILPgATLSMPGIAGIVLTLGMSVD 520 Haemophilus inf...
O67102       334 SLGKDAIEQGIKAGILAIILLAVVLIARYKTAGITANISIFL-N---VLFLLASMAFLG-ATLTLPGIAGIILNMGIAVD 408 Aquifex aeolicu...
O26074       346 SLGKDSVKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVV-N---LFLIVAVMAIFG-ATLTLPGMAGIVLTVGIAVD 420 Helicobacter py...
Q55610       288 TLGQESIRRSLVAGFVGLVLVLVFMAVYYRLPGIVADISLMI-Y---AVLTLAAFALVG-VTLTLPGIAGFILSIGMAVD 362 Synechocystis s...
Q9ZG86       271 ALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVV-N---IVILTAVLSLIG-ASISLASIAGLVLTIGLAVD 345 Brucella melite...
O83425       406 SMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLL-N---LYIMFGVLSAFN-LTLTLSSIAGMILTIGMAVD 480 Treponema palli...
AAC31122     249 QFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVITLSV-Y---IYITLQIFDWMN-AVLTLPGIAALILGVGMAVD 323 Bacillus subtil...
Q50634       377 TLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVA-SgsmVFAILVLLGRYInYTLDLAGIAGLIIGIGTTAD 455 Mycobacterium t...
WP_010889789 405 TLGARTIDLGIKASALALCLVFLFICVYYGLSGVVAGFSLVIyN---VFLILAILSAFN-FTLTLTSIAGLILTMGMAVD 480 Lyme disease sp...
WP_004080746 288 LLGRDVIDASLKAGIIGLILVLVYMIIYYRTMGIVADLALIY-N---TVLLLGVMAAGK-FILTLPGIAGIILTIGTTVD 362 Thermotoga
P44591       521 ANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRA 600 Haemophilus inf...
O67102       409 SNVLIFERVKEELRLGNTVSKAIELGFKRTLSAVWDTHVTLLVASVILFQFGSGPVKGFATTLALGTIASFISNVYYAKV 488 Aquifex aeolicu...
O26074       421 ANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNITSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQG 500 Helicobacter py...
Q55610       363 ANVLIFERTREELRAGNTLYRSVEAGFFRAFSSILDSNVTTLIACAALFWFGSGLVKGFALTLAIGVMVSLFTALTCSRT 442 Synechocystis s...
Q9ZG86       346 AHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRL 425 Brucella melite...
O83425       481 ANVVVFERIREELALGKSRGAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRL 560 Treponema palli...
AAC31122     324 ANIITYERIKEELKLGKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRF 403 Bacillus subtil...
Q50634       456 SFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWP 535 Mycobacterium t...
WP_010889789 481 INIVIYERIKEEIREGRRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRF 560 Lyme disease sp...
WP_004080746 363 GNVIIYERIKEEMRLGKPVKTSIAAGFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRL 442 Thermotoga
P44591       601 LV 602 Haemophilus influenzae Rd KW20
O67102       489 FL 490 Aquifex aeolicus VF5
O26074       501 IY 502 Helicobacter pylori 26695
Q55610       443 LL 444 Synechocystis sp. PCC 6803 substr. Kazusa
Q9ZG86       426 LI 427 Brucella melitensis biovar Abortus
O83425       561 MF 562 Treponema pallidum subsp. pallidum str. Nichols
AAC31122     404 LL 405 Bacillus subtilis subsp. subtilis str. 168
Q50634       536 LV 537 Mycobacterium tuberculosis
WP_010889789 561 IL 562 Lyme disease spirochete
WP_004080746 443 LL 444 Thermotoga
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