Conserved Protein Domain Family
surf_polysacc

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TIGR04396: surf_polysacc 
surface carbohydrate biosynthesis protein
This model describes an uncharacterized homology region found broadly in proteins of surface carbohydrate biosynthesis regions. This family shows distant homology to regions of family TIGR04326, of spore coat polysaccharide biosynthesis protein SpsB from Bacillus subtilis, etc. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Statistics
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PSSM-Id: 275189
Aligned: 24 rows
Threshold Bit Score: 265.293
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_13301933   14 TVLIQCDHKRRDSSSSFLIAFYLRKLGYNVVLGSRLTSRSLYSIFKPELVLLTHP----NSLftP-KEMEEAAKYTTFIL 88  Leptospira sant...
ZP_08330790    4 LIALVVDHPLRDLPSTTLLAYELAKSGADVCLVPLNLLMAETFAIAPDLLILNNI----RRT--T-EGVLSGCIEHNISY 76  gamma proteobac...
ZP_01040810   43 RIGLVVDHPLRDLDGLCLLAQLLCERGHEVVLMPFYTQHLDLPNLELDLIVLNYV----RPA--N-RALVEAASARGIAL 115 Erythrobacter s...
WP_014556624   8 VISIPIETKVREFDGKLWVGLNAVERGYGVVLGPYFEIRHALGIIKPDIHITKDP----GDG--N-VELFKQMDCAGITV 80  Haloquadratum w...
WP_015829154  14 iIFLPVEIVERELDAKLLVALEALERGYIVYIGHYWNLPDIAKKVNGGFYLYKAM----TDY--RaKNLFLPLLHNSVRS 87  Methylovorus gl...
WP_014493836   6 HVCLIVDNPLRDLEGLVLLARQLATRGALATLVPMYEQGFDVLALRPDMVLVNYI----RPN--N-VDLIKSYKRAGVLV 78  Bradyrhizobium ...
WP_012008134   4 WIYLPIETKNRELHSRILLALNAVLENFNVVIASKNKLRKLIRYYPPGFVFFKDH----ASNk-T-KEFMEEAISYSHKI 77  Prochlorococcus...
WP_013753145   3 NFLFPIETTSRELDHKILMAILAAKQKRKVIVGDQQLIRNLSYFVKNGVFYGKHLfgkpMFS--D-DAYYKRLKSHQFNL 79  Glaciecola sp. ...
WP_011541860   9 RIGLIVDHPTRDLPGMVLLGFHLARHDIETALIPMYQQGIDVPLLDLDALVMNFA----RPV--N-LPLARQYHALGTKL 81  Sphingopyxis al...
WP_011714037   7 PIVILVDHRNRDLPGAALLAYHLQRRGTPCKLVPLEAYQAALSAYRPSLILFNHL----MAS--HlAAFSKRLHKMGVLV 80  Magnetococcus m...
ZP_13301933   89 LHPESSGMLRH--Av---iDQMr--gGGASIGD-S-YSKNISQVFTWGTLLRDWIVeAKLYRKEDIE-SIGCPRYDFYIS 158 Leptospira sant...
ZP_08330790   77 GMLDTEGGLYG--Dl---aPFE----VSFSERQ-D-IRDNLACSFIWGKKVYDFIIkRKIFRENQLL-LTGSPRFDFYHP 144 gamma proteobac...
ZP_01040810  116 AVLDTEGGLLP--Et---gPTSgsgiAAYLRES-G-LDTRLSVYLFWGERLRDAIVkKTALAPSRAV-VSGAPRFDLAST 187 Erythrobacter s...
WP_014556624  81 CGLDTEGAVFE--S-----MDQf---TINKT---E-FLNHIDAFCAWGEKPANAVRkHYSG-TDKIH-VTGNPRFDLLRP 144 Haloquadratum w...
WP_015829154  88 GVLDEEGLIFP--S-----LDYy---VRTRIGN-GdAIPVLTKIYSWGAVQSEFVEkKFSIDHSKMV-VSGNPRIDLLRR 155 Methylovorus gl...
WP_014493836  79 GVLDTEGIGGK--N-----ADQf---AGMVKGT-G-CTDLVDLYCVWGQAQYAAFLrQGTVPAEILR-ATGCPRYDFCAP 145 Bradyrhizobium ...
WP_012008134  78 ILLDEESIVFH--P-----DDIf---KKIRVNI-E-ATKLIDHAFFIGKEHKNVYErINVLKFLKDFtISGNPRFDMTTP 145 Prochlorococcus...
WP_013753145  80 VHLNEEGAVWPgnE-----DDWk--tILEQAERpS-VLDASDFVATWGEWQEKFNInREETKAT-VK-CTGHPRFDLYNR 149 Glaciecola sp. ...
WP_011541860  82 FVLDTEGGVLS--SegrasPEAi---ADYTATS-G-FSDLLSGYFFWGDRLRSAFDkAAVLPTDRLF-LTGCPRFDFYTG 153 Sphingopyxis al...
WP_011714037  81 GVLLNEGLIYN--R-----AAL-----AFNTNR-NhPDVHVDIYFSWNEIHAQELRkREFAKNCQVE-VIGIPRFDFYFS 146 Magnetococcus m...
ZP_13301933  159 KDKNHPSGRlgimSTFTGITTFDNRNVFQLLDQGRGLGGVYYGKKGG--------YEDFFWTSAAFARV----YL-EFLD 225 Leptospira sant...
ZP_08330790  145 KWADFYKAT----QSNNEKIVLIPTKVSAANPIGRTLEQETKFLIDEig-----yDEETVHRWRDVGIKqvkeTI-SMMK 214 gamma proteobac...
ZP_01040810  188 RYKrg------svRNN---CVLVNTNFPIVNPAQTGRRRIDDKALRSag-----fTQDEVEELAKSVRTvmdrMI-VAVG 252 Erythrobacter s...
WP_014556624 145 NRRFIYEERaktfIKKYGQFILINGNFSSANPYAESVIKKSEEI-----------YDPSSNSEISYNNRifhlFI-EVIY 212 Haloquadratum w...
WP_015829154 156 PYNKIYTARaaaiNEKHGEFVLVNTNFGPGN-YSPNFGFTYHEHMRYfgristpeEDAYYSERTKYFENlffeYI-EMVK 233 Methylovorus gl...
WP_014493836 146 PWRAALPEP----SVASG-YVLINTNFPTVNPRFSGSSSDEEGAMVQag-----fTREFARQFIADGREayrhTL-GMAI 214 Bradyrhizobium ...
WP_012008134 146 LLRDTYKNEvlklRKKYGKFILVNTHFAQANHLDGDRGFLARVKKSDyan--dleVRKYLEDLSNERKKlfenYCkDLIP 223 Prochlorococcus...
WP_013753145 150 KYNEYFSNEttalKKEFGDFILVNTAFSYSNNGENGVKFIFKKTLSYdak--nseHRKYRFKRWKNQMFsiasIV-ELVN 226 Glaciecola sp. ...
WP_011541860 154 ILRECn------pPKRRG-HILVNTNFPMANPRFIDGRNDDRAALQElg-----fDASYVDALLSENRRimaaMI-ALVD 220 Sphingopyxis al...
WP_011714037 147 PWREVLKNPnlppKTPGVTRVLAVSSAGLADKLNWDPALVDEVFSMWvkh---vdYYKDYWGAIRAHHAaresMF-EHIQ 222 Magnetococcus m...
ZP_13301933  226 VWCLDL-KMPVNFRSYTLENLNDIKYFNQK-----YKPHLELDDGTpFPKWLQDRGGNIFCY-SSSIIESIMSGVPYICV 298 Leptospira sant...
ZP_08330790  215 NLSKDFpDVKFVVRPHPHENLDTYADALSD-----YSNIEVIRKGT-IDQWIARSILLIHRK-CTTAVEAMMAGVPSVAP 287 gamma proteobac...
ZP_01040810  253 RLAEARpSRSFVIRPHPFERCEPYRKAFSA-----RPNVAVVREGS-AMSALLQSDCMLHVN-CTTAVEASLCGIPAISM 325 Erythrobacter s...
WP_014556624 213 HLQTEFpETHIVIRPHPSEKNETYEAAFRK-----YEHIHVEDARD-VRDWIAGSSVVIHHD-CTTGIESAMMGTPVVSY 285 Haloquadratum w...
WP_015829154 234 QLAKNIsPVKVIVRPHPVEDHEHWRRLLSD-----SPNVEVIFEGS-AIDWIVASKCLIHTG-CTTGVEAFVLGKPIFRY 306 Methylovorus gl...
WP_014493836 215 ELAKHFsDVPFVLRPHPFENLDSYGG-FAD-----LPNASVIQSGT-SLEWISGARLLVHQN-CSTAIEATMLNVEPLSM 286 Bradyrhizobium ...
WP_012008134 224 NLSKEFkDFKIIIRTHPEENDSKYELLARK-----FKNIIVIHKGS-VHPWILASELLIHSG-CTTGTEAYALDKISIFY 296 Prochlorococcus...
WP_013753145 227 QLALIYpEKNIVLRPHPSENSEYYEEIFQG-----IDNVHVKYEGP-VTPWLLACKLLIHNG-CTTAIEATLAGKPVVNF 299 Glaciecola sp. ...
WP_011541860 221 DLARDLpGNQIVLRPHPFERFETYESHFSG-----RSNVLVDGEGP-VLDALNGARALVHLN-CGTAVEALMSDVAPLTP 293 Sphingopyxis al...
WP_011714037 223 ALLKQE-RFEVVVRPHPREELDRYSNWLSSlsaqeRSRVILDHDTP-IGELIMDCDVELSLHrCTTAIECWLLGRPDIEL 300 Magnetococcus m...
ZP_13301933  299 QGIIEDRLEFHl--PRKefadirgeiynYTYKPQSIEELVELAKKAY 343 Leptospira santarosai str. CBC379
ZP_08330790  288 LWVPTSANAPD---AEK-----------VSKLCENYESLKESITDCL 320 gamma proteobacterium IMCC1989
ZP_01040810  326 DFINDPQLQAMaslPTK-----------VSHNARDLAHALALIDRSP 361 Erythrobacter sp. NAP1
WP_014556624 286 RPVQNEEYESRl--PQI-----------VSHEASSRRDLTEYIAAWL 319 Haloquadratum walsbyi
WP_015829154 307 NPNLRLDMESEl--PNN-----------LGVENTSIQELISRVSDLL 340 Methylovorus glucosotrophus
WP_014493836 287 EWFNTPALRLDa--ATR-----------VSRPARSEAELIELVRQGL 320 Bradyrhizobium japonicum
WP_012008134 297 NC-----LKLNy--PGL-----------STYEVENKTQLFSLIKTII 325 Prochlorococcus marinus
WP_013753145 300 SNGSTDDYDVYl--ANI-----------CGVTLSTNKQVTDFIDKLe 333 Glaciecola sp. 4H-3-7+YE-5
WP_011541860 294 DWINSDFMRRHvelPSR-----------ASHSVGSYAEMLDLLRSDV 329 Sphingopyxis alaskensis
WP_011714037 301 PMEKHPILYSEe--RDY-----------LAPECHQPEELAGLVDAAV 334 Magnetococcus marinus
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