3CDI,5YJJ,4AM3,4NBQ,6D6K,7LD5


Conserved Protein Domain Family
Pnp

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COG1185: Pnp 
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 440798
Aligned: 633 rows
Threshold Bit Score: 868.553
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3CDI_A        12 VRKFQYGQHTVTLETGMMARQATAAVMVSM-DDTAVFVTVVGQKKa-KPGQDFFPLTVNYQERTYAAGRIPGS-FFRREG 88 
AHB40971      12 AKSFDRAGKSLSFETGKLAVQADCSLKIDL-GDNQLLCSTVMEKNp-RSDMDFLPLMIDFRDSYSAVGRLGGAaYRRREG 89 
AKH33109      12 RNSYEISGQNFTFASGILAPQADSAVTVQF-GDNVLLFTVVMEKHp-RPELDFLPLTIDYREMFSAGGKIGGAaYRRREA 89 
AKM82319       4 DFKTTIADKELVISTGKLAQLASGSVTVRY-GDTVVLATAVVAAEa-RDDIDYFPLLVDYEERLYAAGKISGSrFIKREG 81 
AKM84979       3 QFTTQLGEAKLTLETGRLAGLANGSVTLRI-GDTVVLATAVIASTp-RENIDFFPLMIDYEERFYASGKISGSrFIKREG 80 
ALM10122      15 EFTLMLGDQELKFKTGLIGTQANATVLCQM-GGTVAMSNVTVSAKp-RVGVDFLPLQVVFQEKYYAGGRIGGSrFRKREG 92 
WP_015641783  13 AVSTDFCGKKLTLEVNRVGFRTTASVLVTY-GDTVVLGTAMVGTKp--VVLDYFPLSIDYEEKMYAAGKISGSrFIKREG 89 
WP_039326782  13 SVTTEFCGRPLTLEVNRVGFRTTGSVLVRY-GDTVVLGSAQVSSRp--VQMDYFPLSIDYEEKFYAAGKISGSrFIKREG 89 
WP_119725221  16 KKTYEIEGQKITFESGKIGLLIDGAVTISDeNDNILFVTAGFKQDglNEKADFFPLVVDFQEKYYATGKIGGNkFQKREG 95 
WP_104944837  14 KVETDFCGRTLSLEINRVGFRTSASVIVRY-GETVVLGTAMVSDQa-ITGFDYFPLSIDYEEKFYAAGKISGSrFIKREG 91 
3CDI_A        89 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-NDQY 167
AHB40971      90 RPSDQAVLYSRLVDRALRPMFPKGMINDVIITISPLGVAQDIDLGVMSIVGSSLSIMVAGIPFDGPVGAAQVGYI-DGQY 168
AKH33109      90 KPSDNCILYARLTDRALRPLFPKGMINPVVISVTPLSLDGTQDLGVMSLIGSSLATMMAGIPLKGPVGAVRIGRI-DGEF 168
AKM82319      82 RPSEQAILTCRLIDRPIRPLFPKAFKNDVQVVITVLSFDLENDPGIISIIAASAALCQSNAPFEGPVAASRVGLI-DGEF 160
AKM84979      81 RPSEDAILSARLIDRPLRPLFPKGFYNDIQVVITVLSADLVHDPDIIAITAASAALMQAGAPFAGPVAGVRVGLI-SGKF 159
ALM10122      93 RPADQFVLLGRVVDRGLRPMLPKHIRNDIQVFCTVLSYDNEQEYDIAAANAANLAVSLSDCPAAGPLGTVRVGLI-GGEL 171
WP_015641783  90 RPSDEAILIGRLIDRPIRPLFPKGYRQEVQVVSSVLSMDPNFRPDMVAMIAASAALMLTGTPFDGPVAGLRVGRV-AGEF 168
WP_039326782  90 RPSDEAVLIGRLIDRPIRPLFPKGYRQEVQVVATVLSMDPDFRPDVIAMIAASSALMLTGTPFDGPVSGLRVGRV-NGEF 168
WP_119725221  96 RPTDDATLSARLIDRPIRPMFPKGIVNDTQVIVTVLSASGERELGFWGIVGASLTLMMAGTPFEGPVGACRLALMaDGKY 175
WP_104944837  92 RPSDEAILIGRLIDRPIRPLWPKGYRHEVQGVASVLSTDPAFRPDMIAMIAMSAAFMLTGAPFEGPVAGIRVGLK-DGKP 170
3CDI_A       168 VLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELV----KEAGKPRWDWQPEP 243
AHB40971     169 IINPTKEQLKTSLLNLLVSGKKGSINMIECEGNEIPEEILKQAFVEGQKAIDESCDAQAAYL----KLCTVEPKKIVYNK 244
AKH33109     169 IINPTLEQIETGEMNLICAGKKGSINMIELDAKQVSDEIIKQAFLLAQTKIDEMCDIQSQYL----TSFSVTPREVVYNK 244
AKM82319     161 VLNPTVKQLENSKLDLVVAGNKEKVLMLEAGSNEVDEKTMIEAIKFGHKGLQPALEIQKELI----SETKHTVEEAEE-- 234
AKM84979     160 VLNPTYEERAKSELDLVVAGTGDAIMMVEAGASEVAEAKMVEAIEFAHAALQPAIALQHEMV----KQLNVTNGEYAIVT 235
ALM10122     172 VLNPTREARTKSDLDMFVTATPERVVMIEAGANQVPEAEILKAIQFGKKWAQKIATFFADLQ----KKEGKKKFEVAPPY 247
WP_015641783 169 KAFLTPEERAASDLDLVVAGIESGITMVEAGANEVAEDVIIDAMRWAFEAFQPAIALQHELA----KKVAPVAQEYDLVL 244
WP_039326782 169 KAFLTQEEREKSDLDLVVAGIESGITMVEAGAKEVSEDVIVDAMAWAHQMMQPAITLQRELA----EKVAPAPQEYTLIL 244
WP_119725221 176 IFNPSVEEEKSSILNLLTAGTSDAITMVEAAAKEASDKQMLDALAKSHEIIKKIIEAEKDYLslykDKYGIPEPKVVYNL 255
WP_104944837 171 IAFMSLEDAKTNDLDLVVAGTEAAIMMVEAGANEVSEEQIAEALTWAHQAMQPAIRLQKELV----EKAGVIAKEYTLSL 246
3CDI_A       244 VNEALNARVAALAEARLSDAYRIT-DKQERYAQVDVIKSETIATLLA---EDe------T--LDENELGEILHAIEKNVV 311
AHB40971     245 PSDEVIAYVSNILTADKLSAMTGN-AKVGFNELFSKYEKEAIEIAKE---NIenn-dleD--FTESKVKMAVFYVIKHFL 317
AKH33109     245 PSQALLDYVRNLYSDEIKAGMIGN-TKVSFNDKFYEFERMVMEDAKA---SIedd-tieD--FTTSKVKMAVFQVIKDVI 317
AKM82319     235 --PAIIKEIKSYLGKKLAEIVYVT-DKAKRQEQISAFEKEVLENFEG---NY-----------KQIELKSAFGQVLEKEV 297
AKM84979     236 PPAELKTAIATRLGGKLEEAIYHP-EKMVRNAKLDSLRQAIWEEFIS---E--------E--NPETVVADIFSKVVSEEF 301
ALM10122     248 ENKEASALLKEWALSTVNKAIKDPlKKLDRRIIFNGFMDGAAEKLQE---KYglagekeEliELYAHASDLMDKIIKAEV 324
WP_015641783 245 PDETIQKEVDQWVEGKLGAALRKA--YPERNELINELRWSFHEAMTE---KVgd---dyS--DAKDEYDEAFTMAVHKDV 314
WP_039326782 245 PDESIQQTVDEWAKGKFGEKLRRP--YPERNEMISQIRAEFHEAMAE---KLgmdeeeyN--EVRGDYDEAFTLALHKDV 317
WP_119725221 256 PNADIYSEIKEFLTEEKLEVLYDK-GKKEFQKELDNLTDLTKEYLLGvgyNFede--nqEkyLDENSIGEFVYKRVKEVM 332
WP_104944837 247 PSEDIQKAVDAFLDGKMGEKLRAP--MAERHQRMHELRLSMLAHFAE---DLgd---gwE--SVKRDYEDAFASAANKDV 316
3CDI_A       312 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELM-GE-RTDTFLFHYNF 388
AHB40971     318 RHRTLETGKRIDDRDIKEIRTLYCEVGLFPR-THGTGLFRRGDTQVLSTVTLGGPGEYLIIDDME-NDyVKQRYMHHYNF 395
AKH33109     318 RDRTLHEGLRVDNRSMTDIRPLFTQVDTVPR-VHGSGLFRRGDTQVLSTVTLGSPGDALLIDDMEhTD-KEQRYFHHYNF 395
AKM82319     298 RQAVIDKEIRPDGRKIDEIRPISVEVDLLPR-THGSGLFTRGQTQVMSIITLGPPSEEQIIETME-EE-GTKRYMHHYNF 374
AKM84979     302 RKNILEQGKRPDGRKLDEIRPLQIEVGLLPR-PHGSALFTRGETQALSTVTLGSLDDEQMLDTME-LD-TTKRYMHHYNF 378
ALM10122     325 RRLILEEGIRMSSRKVNEIRPITATLDPLPNfVHGSALFQRGETQGLTTCTLGAPGDKQIVEGMA-GE-YKMRYMHHYNF 402
WP_015641783 315 RDGIVKDGVRPDGRKLDEIRPLSSEVGLLPR-AHGSSLFTRGVTQGLNIVTLAPLSFAQIVDTMEvTD-GERRYMHHYNA 392
WP_039326782 318 RQGIVAEQVRPDGRQLTEIRPLSSEVGFLPR-AHGSSLFTRGVTQGMNIVTLAPLSYSQLVDTMEvND-GERRYMHHYNA 395
WP_119725221 333 RKNILQNERRLDGRKLDEVRTVSGEVSLLPR-THGSALFRRGLTQALSVTTLGGPDDTQVLDGMM-PE-TEKIYMHHYNF 409
WP_104944837 317 RKGILVDGVRPDGRGFTEIRPLSSEVGILPR-AHGSSLFTRGLTQGLNIVTLAPLSYAQLVDTME-RN-EEKRYMHHYNA 393
3CDI_A       389 PPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDmdKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 468
AHB40971     396 PPFSVGDAKAIRGTGRREIGHGRLAEKAIEPMLPAkeDFPYTIRVVSDCLGSGGSTSMGSVCGSTLSLMDAGVPLKKPVA 475
AKH33109     396 PPFSTGDAQAIRFLSRREVGHGKLAEKALEHVLPSkeEFGYTIRVVSDCLASGGSTSMGATCGSTLSLLAAGVPLKAPVS 475
AKM82319     375 PPFSTGEVKPMRSTSRREIGHGALAERALLPVIPSreEFPYTIRVVSEVLASNGSSSMASTCGSTLALMDAGVPIKTPVA 454
AKM84979     379 PPYATGEVKPMRTTGRREIGHGALAERALLPMIPSreDFPYTIRVVSEILASNGSSSMASVCGSTLSLMDAGVPITKPVA 458
ALM10122     403 PPFSVGETSNRLMVGNREIGHGSLAQRALEPVLPTeeNFPYTIRTVTEILESNGSSSMAATCGSTLALMAAGVPISAPVA 482
WP_015641783 393 PGYTVGEVRRLGSPGRREIGHGYLAERALIPVLPTeeEFPYAIRSVTEIMSQNGSTSMAATCSSCLALMDAGVPIKRPVS 472
WP_039326782 396 PGYTVGEVKRMGSPGRREIGHGYLAERALLPVLPAeeDFPYAIRSVTEIMSQNGSTSMAATCSSCLALMDAGVPLSAPVS 475
WP_119725221 410 PPYSVGEVRMLRGVGRREIGHGALAEKALVAVLPSleEFPYTIRVVSEIMTCNGSSSMASICGSTMSLMNAGVPIKAPVA 489
WP_104944837 394 PGYTVGEIKRLGSPGRREIGHSALAERALLPVLPSeeVFPYAIRSVTEIMSQNGSTSMAATCSSCLALMDAGVPLTAPVS 473
3CDI_A       469 GIAMGLVK--EGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 540
AHB40971     476 GIAMGLMT--EHEedgtitKHMVLNDLMATEDFMGDMDFKVAGTKEGVTAIQLDTKLKGITMDIVHETITRACEGYKEIM 553
AKH33109     476 GVAMGLMT--EQDdeghitNYKILTDLMGTEDFIGDMDFKVAGTRDGITAIQLDTKVGGLTMEIIHNTIDLAHTGRNEIM 553
AKM82319     455 GIAMGLMTseDGK------KHKILTDIAGIEDFAGDMDFKITATKDGITAIQLDTKLKGLDFDVLQEALVAARKANDTIL 528
AKM84979     459 GIAMGLVT--GDG------KYKILTDIAGIEDFNGDMDFKVAGSHDGITALQMDIKVTGITKEIMSEALAQAREAREFLL 530
ALM10122     483 GIALGLIS--DEEk----gKYVILSDLQDEEDFGGDMDFKVGGTEKGVTAIQMDIKLKGLPDSVFEEAITRSREGRLEIM 556
WP_015641783 473 GIAMGLMV--DGD------THYVLSDIADAEDFAGDMDFKVTGTEQGITAVQMDMKVHGLPVEVLADAIRKAGPGRQHIL 544
WP_039326782 476 GIAMGLMM--DGD------TPYVLSDIADAEDFAGDMDFKVTGTAKGITALQMDMKVHGLPVAVLRQAIEQSKAGRAHIL 547
WP_119725221 490 GVAMGMIY--DEEt----gNYKILSDIQAQEDFLGDMDFKVGRTKNGITAMQLDVKIKGLKLEVFENTFAQSKGAIDYIL 563
WP_104944837 474 GIAMGLMT--DGK------QNIILSDIADAEDFAGDMDFKTAGTAKGITALQMDMKVHGLSVETLTKALLQGKEGKAYIL 545
3CDI_A       541 GVMEQAINAPRGDiSEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET-G----TTIEIEDDGTVKIAATDGEKAKHAI 615
AHB40971     554 DFMLETIPAPRTAvGTYAPKIFTMKISPDKIKEVIGKGGDVINKIIEVSgG----VKIDLSDDGMCFITHQDQLAIDKAV 629
AKH33109     554 DVMLETISTHRSQlSPYAPKMVVFKINPDKVKMVIGKGGEMIDKIIELSgG----VKIDFEDDGTCYVAHMDQDKIDKAI 629
AKM82319     529 SKINAVISEPRKElSKYAPRIETVKIPIDKIGEIIGPGGKNIRKLIEDC-GgkevITIDIEDDGTVTVASIEPEASKKAL 607
AKM84979     531 AEMSKVIAAPRSElSPFAPRVIVVKVPQDRIGEVIGPGGRVINEIIDRA-GgkgvTNISIEEDGNAFVTSSDPKLGEQAA 609
ALM10122     557 KVMTAAIAEPRKElSPHAPRIEVIQINPEDIRLVIGKGGEMIQKITGEL-G----VEIDIEDSGLIFVTALNGDSMQKAK 631
WP_015641783 545 EHMKSTLAGPRQAlSPYAPRIEKIKINPDKIGAVIGKGGEVINKITSET-G----AMIDIKDDGLITVASSDTASIEKAL 619
WP_039326782 548 QHMLSVLATPRDQlSPYAPRIEKIKIDPDKIGAVIGKGGETINKITSET-G----AEVDIKEDGLITIASPNGESIEKAL 622
WP_119725221 564 EEMLKVQPKVAESlSPYAPLILKISIPVDKISAVIGRGGENVQKMEKDY-N----LRISIADDGVTTITADSQENAEIVI 638
WP_104944837 546 EHMLTTIAEPRKElSPYAPHVEAITINPDKIREVIGKGGEMIQRITAET-G----TEIDIKDDGTVMIASPDGASIQKAI 620
3CDI_A       616 RRIEEITAEIEVGRVY-TGKVTRIV-------D-FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 686
AHB40971     630 EMIKEIITDLEIGQTF-DAKITRVE-------E-YGIFVQLPKKKMGLCHVSQLGQKFTPPLTNHFKIGTTLKVTITGID 700
AKH33109     630 ELIKDIAEDLPLNTVI-EGKIAKVE-------A-FGFFVDLPKKQSGLIHVSQLGELGKPTVSAHFKPGQFVKVIATGTD 700
AKM82319     608 TYIEGVTKEVELGKIY-EGPVTTIVkdrmsgkE-IGAIVQVLPNQDGMVHISQIADERVEKIEDVLKIGQVVKVKVMEID 685
AKM84979     610 QTIRDMMREIKPGEKF-NGRVTRIM-------D-FGAFVEVLPGREGLVHISQLANHRVEKVTDVVKEGDMLDVVVTEID 680
ALM10122     632 EWIQGIVAKPEIGKVY-DCKVVRII-------DgVGAIVEFLRGKDAMIHISELQWPRTEKVEDVLKMGDEVKAKCVEYD 703
WP_015641783 620 EWIRGLTEEPEVGKIY-TGKVVTIK-------D-FGAFVNIMPGTDGMLHISQLSDKRVEKVTDILKEGQIVNVLLSGID 690
WP_039326782 623 NWIKSLVEEPEVGKVY-KGKVVSIK-------D-FGAFVNILPGVDGMVHISKLAEGRVNKVTDVVKEGQSVRVKITGID 693
WP_119725221 639 EKIKEIIWEPEVGFKG-TGIVEKII-------DgVGAIVA-FKGKTGMIHISKLSYKRVAKVEDILNIGDKVDFEIVEID 709
WP_104944837 621 EWIKGMTEDPAVGTIYyDKPVVSVM-------D-FGAFVQILPGKDGLVHVSEMREERVEKPSDVVKEGDKVTVKLVAID 692
3CDI_A       687 r-QGRIRLSIKE 697
AHB40971     701 p-TGKIGCKITA 711
AKH33109     701 d-KGRLQLKMAS 711
AKM82319     686 keRGRVSLSIKA 697
AKM84979     681 n-LGRINLSHKA 691
ALM10122     704 piDGKTRMSLKQ 715
WP_015641783 691 e-KGRLSLTMKG 701
WP_039326782 694 e-RGKINLTMIG 704
WP_119725221 710 laKGKIGLKRIL 721
WP_104944837 693 d-RGRLQLSMKA 703
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