Conserved Protein Domain Family
GH43_CtGH43-like

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cd18824: GH43_CtGH43-like 
Glycosyl hydrolase family 43 protein similar to Clostridium thermocellum exo-beta-1,3-galactanase CtGH43 and Ruminococcus champanellensis arabinanase Ara43A
This uncharacterized glycosyl hydrolase family 43 (GH43) subgroup belongs to a subgroup which includes characterized enzymes with exo-beta-1,3-galactanase (EC 3.2.1.145, also known as galactan 1,3-beta-galactosidase) activity such as Clostridium thermocellum (Ct1,3Gal43A or CtGH43) and Phanerochaete chrysosporium 1,3Gal43A (Pc1, 3Gal43A), and arabinanase (EC 3.2.1.99) activity such as Ruminococcus champanellensis Ara43A. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Statistics
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PSSM-Id: 350145
Aligned: 15 rows
Threshold Bit Score: 277.758
Created: 23-Feb-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DENG] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68; in galactan beta-1,3-galactosidases (EC 3.2.1.145) the first of these residue is a Gly

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #                                                                           
APG03461   71 IDAHDGQIQRFgd--rYYLYGTrygcgfrw---------------ndkkspfcGFVSYSSTDLTHWRaegalfdasspd- 132 Luteibacter rhizov...
ABQ08069   62 VDAHDGCLVKFkd--tYFMYGTvygnchqstti----------cdavcgylnnTFSLYISSDLVNWTlinnnilpe---- 125 Adineta vaga
EKU22413   42 LDAHDGTIQRFhkdgpYYMHAVeyglcqapnitgc------dspdrcgfrldhNLSVYTSWDLSCGSwafqgyafp---- 111 Nannochloropsis ga...
SDM66261   70 VDAHDGEISVFgg--vYYLYGTsydcgyrw---------------qqagtpfcGFKVYSSTDLVHWDdrgylfdgtsst- 131 Streptomyces guand...
CZS93353   37 RYQFDTDVDWFgg--aYVWYGLplgcg----------------------kefcGVATYSSTNLQTWHyngllfdpniaei 92  Rhynchosporium com...
CZR54322   49 IDLTSGKIDFLgg--aYIWYGLpfgcg----------------------aafcGVATYSSVDLQTWSfnglafdpntaei 104 Phialocephala suba...
EDM36071   68 IDAHDGEIAVFdg--vYYLYGTsygcgfqw---------------gkkdapfcGFKVYSSTDMVHWTdkgflfdaktpv- 129 Pedobacter sp. BAL39
SEP51035   49 LDAHDGSILQAgn--tFYLYGTsyacgygy----------------qqngtfcGFKAYSSPDLVHWTdrgyivp------ 104 Amycolatopsis saal...
BAM02650   18 IDCHDGCLRFFgg--sYFLYGTaygdsd-------------------gftpanRYVVYASPNLKDWIprgdlla------ 70  Phycisphaera mikur...
EDQ88893   64 VLEHEGTYYFYf----NNWGGCpgvdccatgncatccftarpytdpcvytanhTVVVYATQDFANFTylgvalpt----- 134 Monosiga brevicoll...
Feature 1                                                                                 #   
APG03461  133 wqkrcdgstygCFRPHVVFNArtQRYVLWINsy---dVSVGYHVFTattPTGPFVEaplpklain-reqppglnhGDHDV 208 Luteibacter rhizov...
ABQ08069  126 --atkdhnyinYWMPNVEYNYrtNQYVMVYWssrygfINSSIAIAVsstPFGPFVNvpplvmk------gakvisSTTGL 197 Adineta vaga
EKU22413  112 ---wterpagtLFRPSAVFNPttHEYILWWNyvypngTYAGFAVATsskPQGPFEQrraqvn-------iahlpaGDFHL 181 Nannochloropsis ga...
SDM66261  132 wqtrcngstygCFRPHVVYDAatARYVLWINvy---dNSVGYRVFTatqPTGPFAEaavptlavnnsapvggvnnGDHSV 208 Streptomyces guand...
CZS93353   93 kslcgaflsgnCGRPHIIHSAinNEYVLWVDa-----KTPGYAIFTsncPIGGFVHs------------------ESRDL 149 Rhynchosporium com...
CZR54322  105 etlclaplsgnCGRPHIVYSAanNDYVLWVNa-----GSPGYVLFTsssPTSGFVQnsdralvgv--qppgpfqaGDFSV 177 Phialocephala suba...
EDM36071  130 wqsrcngntygCFRPHVVFNKktGLYVLWINvy---dNVSGFRVFTsksPLGPFVEvaepklavnsdapaaglnnGDHDT 206 Pedobacter sp. BAL39
SEP51035  105 -----pgscayCFRPHVVFNArtGQYVLWAD------GGGRYLVATspaPTGLFTArpdpkl--------avggaVDESL 165 Amycolatopsis saal...
BAM02650   71 -----aplpgvSYRPYVVRRPcdGRYVLWFNwyp-elWEGRFGVAVsdtPEGPFEVvdeave-------vsqpepGDHNV 137 Phycisphaera mikur...
EDQ88893  135 ---sarpepriEFRPHVVYNArdARFVMWYEsri-igGASMYAVAVsetPQGPFTTltenvam------agsgriGDYDI 204 Monosiga brevicoll...
Feature 1                                                                    #                
APG03461  209 FVDLDgTAYLAYTDwrq-----------kgdIVVEQLDDSYLSGngryvr-------lglkaTEAPSIFRRgsTYYLTFS 270 Luteibacter rhizov...
ABQ08069  198 FVDDDnTAYVRYNTrdg-----------plrHVIEKLSSDWMTStgqfsiiv---ekqdypwFEGGGIFKRkgFYYTMLG 263 Adineta vaga
EKU22413  182 FVDDDgTGYVLYSAdf--------------wITIEELTPDFLGVsgrafdgf--rgngsewgFEAPVMFKRkgIYYILFG 245 Nannochloropsis ga...
SDM66261  209 FVDDDgTAYLAYTDwrs-----------ggdIVVERLSADYLTGtgayvr-------lhqsaTEAPALFRRgsTYYLTYS 270 Streptomyces guand...
CZS93353  150 VVYQPpGPFKAGDFsvhpp--------fpqsIYVQKLTSDMRNTngttyqvit-ngdlvdieAEYPELWKRgdYLYITAS 220 Rhynchosporium com...
CZR54322  178 HVTNG-TGYLAYSLidfttagasiwppfnqsIYVQQLTPDMRNTtglayhvvsssndlidfeAESPDIFKRngYFYISAS 256 Phialocephala suba...
EDM36071  207 FVDQDgTGYLAFTDwrt-----------kgtIVIEKLSDDYLTGtgecvk------sitpgsTEAPSLFLRkgIYYLTYS 269 Pedobacter sp. BAL39
SEP51035  166 FVDTDgTGYVIHNTtqvda-------gltadMVVERLTPDYLGTtgeyvr-------lglgdVEAFTVFKRdgVYHALMS 231 Amycolatopsis saal...
BAM02650  138 AVGADgTGWLIYTSipdrg-------qgdhgMSVERLSGDLCSStgensg-------fldfqVEAPSLFEHagSWWALFG 203 Phycisphaera mikur...
EDQ88893  205 FVDDDgIAYHVRTG-----------------FVVEQLTANYTAStgnftt------fstpqaAEAPIMFKRqgTYYMIAG 261 Monosiga brevicoll...
Feature 1                                                                                     
APG03461  271 Dp-nCGYCTTGTSYLRATTPLGPWSgkpargiset------------------------qhrglpisdtSCGGQPADVAM 325 Luteibacter rhizov...
ABQ08069  264 IdccFCQWGGDARTFISNNPLGNWTyfgqlnycadgkappdhi--------dgmninpcslnnpygtnfTIPAQQFNVAT 335 Adineta vaga
EKU22413  246 PmccFCYQGSGIRVYTATSPLGPYTfqgddiacaskgtfaatahtradndgpiptpeqgclfygtdqisTTRAQQNFVIE 325 Nannochloropsis ga...
SDM66261  271 DpncGYCGGTGTSYRTASSPLGTWSagtk------------------------------------vttnSCGGQPAFVSA 314 Streptomyces guand...
CZS93353  221 Dt-cGFCTGTLLVVYRSRNISGPWKrqim-------------------------------------sadTCGGQTTGVLT 262 Rhynchosporium com...
CZR54322  257 Nt-cGFCTGTVLIFYRSKTLAGPWTrqii-------------------------------------ssdTCGGQTTGVLT 298 Phialocephala suba...
EDM36071  270 DpncGYCSGTGTSYRMAKSPLGPWSegih------------------------------------isnnSCGGQPSFVSP 313 Pedobacter sp. BAL39
SEP51035  232 Dp-sCAYCSGGTGEMTATSMLGAWSgawydpngvhqsgr-----------------aeprwrarivnadNCGGQPLASLP 293 Amycolatopsis saal...
BAM02650  204 NtccFCPEGAGARLYRAQHPLGPWAfvrdinr-------------------------------dddggvIVAGQQTDVAP 252 Phycisphaera mikur...
EDQ88893  262 TgccACRGGSTIYLFAASHPLSTYTylgdfgsntth-----------------------afdpaspwnyVTRSQPTAVFR 318 Monosiga brevicoll...
Feature 1                                                       
APG03461  326 Lpgr------------ngPIYLYQSDRWdngn---psetKATHYWEPLRF 360 Luteibacter rhizovicinus DSM 16549
ABQ08069  336 Lpis-----------seeTLFMYYGERFrsskd--gikgHDFQAWIPIEF 372 Adineta vaga
EKU22413  326 Vqts-----------ggeTEYVWTGDRWmqspd--glkgHEPQYWFPLSF 362 Nannochloropsis gaditana CCMP526
SDM66261  315 Iptt------------sgTAYLYASDLWnnga---aneaLANYFWAPLSF 349 Streptomyces guanduensis
CZS93353  263 Lhapn----------ggpPSYIHMADLFrtapisgtrtaAHGHQFEKLDF 302 Rhynchosporium commune
CZR54322  299 Lpspt----------ggmTSYLHVADLFatarltgtrtaAHGHQIQLLSF 338 Phialocephala subalpina
EDM36071  314 Ials------------sgTIFLYGSDLWnnaa---knesLANYYWAPLVF 348 Pedobacter sp. BAL39
SEP51035  294 Vvga-----------dgrTGYYFVSDRWdhra---pnesLANFFFGPMSF 329 Amycolatopsis saalfeldensis
BAM02650  253 Lp---------------gGVLLFMADRWgsrgd--gvkgHDLQHWEPLAL 285 Phycisphaera mikurensis NBRC 102666
EDQ88893  319 VpsptraasmgsetlshdDQYIFLGNQWvtaaepghprnHDLLYWSQLSF 368 Monosiga brevicollis MX1

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