1L0Q,1RD6


Conserved Protein Domain Family
PKD

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smart00089: PKD 
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Repeats in polycystic kidney disease 1 (PKD1) and other proteins
Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Statistics
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PSSM-Id: 214510
Aligned: 84 rows
Threshold Bit Score: 38.9714
Created: 13-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1L0Q_A    306 SADFKSNITSGYi---fLSEPVQFTDLSk--------dATEWKWDFGDG-----------------------SSSKK--- 348  Methanosarcina ma...
AAB86683  984 GLVVQPHPARRV-----LMESVVSYTASvle-----gsNPTFKWTVDDK-----------------------PFFTY--- 1027 torafugu
O08852    930 RAVPSPEARVLQ------GILVRYSPMVea------gsDVAFRWT-IDDkq--------------------sLTFHN--- 973  house mouse
AAB86683 1077 VPDVVPQGSTQT-----LTTSVLIDMAV----------PATVRWSFGDGgyeqfehkppy-pssltcpespyQVLLS--- 1137 torafugu
AAC50128 1216 SVDMSLAVEQ--------GAPVVVSAAVqt------gdNITWTFDMGDG-----------------------TVLSGp-- 1256 human
AAB59488 1061 VGNVTLQPER---------QFVQLGDEAwlvacawppfPYRYTWDFGTEea-------------------apTRARG--- 1109 human
AAB86683 1429 KISVTAEKSHf-----aVGEKIQFQARAep------efNYTYEWDFGGE-----------------------EDLVLpha 1474 torafugu
BAD92262   31 VSGLSIRASEPGgsfvaAGSSVPFWGQLat------gtNVSWCWAVPGG-----------------------SSKRG--- 78   human
O08852   1208 GLTVYLSPSVEQ------GAPMVVSASVes------gdNITWTFDMGDGt----------------------VFTGPe-- 1251 house mouse
AAC50128 1021 GLQVSTVPAVLS-----PNATLALTAGVlvd----savEVAFLWTFGDGeqalhqfqppynesfpvpdpsvaQVLVE--- 1088 human
1L0Q_A    349 -QNP--THTYSETGIYTVRLTVSNSNg-TDSQISTVNVV 383  Methanosarcina mazei S-6
AAB86683 1028 -YNTvlNVIYQHADVYKLTVTAMNHVs-TLTEDFNVTVD 1064 torafugu
O08852    974 -TVF--NVIYQSAAIFKLSLTASNHVs---NITVNYNVT 1006 house mouse
AAB86683 1138 -SNV--TYIYSQPGIYTAVVSVSNRYe-NISRSINMSVY 1172 torafugu
AAC50128 1257 eATV--EHVYLRAQNCTVTVGAGSPAg---HLARSLHVL 1290 human
AAB59488 1110 -PEV--TFIYRDPGSYLVTVTASNNIs-AANDSALVEVQ 1144 human
AAB86683 1475 pANV--VKTYNNPGCYVVTVAASNNVs-NTTGSISIEVL 1510 torafugu
BAD92262   79 -PHV--TMVFPDAGTFSIRLNASNAVswVSATYNLTAEE 114  human
O08852   1252 -ATV--QHVYLRAQNFTVTVEAANPAg-HLSQSLHVQVF 1286 house mouse
AAC50128 1089 -HNV--THTYAAPGEYLLTVLASNAFe-NLTQQVPVSVR 1123 human
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