3P9A


Conserved Protein Domain Family
GP3_package

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pfam16677: GP3_package 
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DNA-packaging protein gp3
DNA-packaging protein gp3 (terminase small subunit) is involved in DNA packing in bacteriophage. it contains a channel where DNA is bound and passed to DNA-packaging protein gp2 (terminase large subunit).
Statistics
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PSSM-Id: 435507
Aligned: 11 rows
Threshold Bit Score: 99.808
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3P9A_C                17 GRNPKFESPEALWAACCEYFEWVEANplwemkafsyq----------------geviqepiakMRAMTITGLTLFIDVT- 79  Salmone...
goetting:Cspa_c57180   8 GRPRAFNSQEELEQKIMEYWQRCEQN-------------------------------------NKPYTLSGLALWIGID- 49 
CCX38750               4 KRPKRSL--RALKAAAEAYLRDCDQA-------------------------------------QRFPTVTGLALALGFSg 44 
WP_015752040          12 GRPPSFESPEEMATSIDEYFLRCDAE-------------------------------------NRPYTVPGLARALGFSt 54  Desulfo...
Q7N321                 9 GCPSKLN--DELIAKARDYLYggye-----------------------------------svgDVVPSVAGLACYLAIA- 50  Photorh...
WP_014108595           1 MRPTKYC--KKVQAKADWYAEggyl-----------------------------------dcgDAVPSQAGLACELSVT- 42  Glaciec...
ACQ68287               9 GRPSKLT--VSL-EKAKAYLMgeyk-----------------------------------tvgDVVPNIAGLACYLNIS- 49 
jgi:Cpin_3878         43 GRPPLYETPEELSAAVDAYFIYCEGEfhietevtvkkkkgksdndedddqdvsthekkvwdrwPEAPTVTGLTLFLGFAh 122
EAR14036              17 GRDRIFDSPEDMAEQINEYFQWCLLNplmeaqvikgrvieeder-dgevvkvtknhemvevpkMRPFTLEGLCNYIDIG- 94 
WP_007754913          17 GRSKRFASPEQLWEAACEYFAYCDRTpwkviknktkg----------------eikekeenptQRPYSLTGLMAYLDVS- 79  Bactero...
CCZ05907              16 GRDKLFSDAETLWREACLYFDWCDRHplkkaelvkyk----------------gayeeagvtlARAYTVDGLTRYLGVS- 78 
3P9A_C                80 LETWRTYRLr--eDLS------------EVVTRAEQVIYDQKFSGAAADLLNANIIARd----lGLKEQ--SQV 133 Salmonella ph...
goetting:Cspa_c57180  50 RRTLYNYSTr--dEFF------------PTIKKAKDIVEASMEERALTGDNNVTFSIFalknnfGWRDK--QEI 107
CCX38750              45 REEMERFAAreggPVA------------NLLEWARSHVEEETLQ-AVYRRDTSSGARFilqssfGYGEK--NTH 103
WP_015752040          55 RKSLWDYEGk--pEFV------------NTIKRAKLRIEEQRSEQLIMRQSNCTGLIFdlknnfGWQDKfdQEV 114 Desulfohalobi...
Q7N321                51 RSTAYEYGKqs-sEFS------------DILEGIGAMQENKLINKGLTGDFNSTIAKMmlt-khGYSDK--QEI 108 Photorhabdus ...
WP_014108595          43 RQTLVNWKEqh-pKFL------------DTLDLISVVQERLSLSGGLKGEMNSAIVKLlla-nhGYSEK--KAL 100 Glaciecola ni...
ACQ68287              50 RSTIYEWSSssnvEFS------------DIVEGILALQENKLLNSGLKGEFNPTITKLmls-khGYADK--QET 108
jgi:Cpin_3878        123 RQSLDDQEErg-aEFS------------DIIKRGRLRVEHGYEKRLFHDRPTGAIFALsn---mGWKNQ--HQF 178
EAR14036              95 VSTFKDYEKr--kDFS------------WVTTRARQIIDNQQFEGAASGFLNPSIIARk----lGLADH--QKV 148
WP_007754913          80 KSFWNDFKKgsheDFS------------VVITRIENVIRTQQLEGAIVGAFNPNIVSRi----iGLSDK--QKV 135 Bacteroides f...
CCZ05907              79 GSYFRTAKSrlreKIErggaalseisllETIELIEQTVRTQQIEGAAAGIFSAGLVARl----nGLAEN--TNV 146
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