Conserved Protein Domain Family
RE_Eco47II

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pfam09553: RE_Eco47II 
Eco47II restriction endonuclease
This family includes the Eco47II (which recognizes GGNCC, but the cleavage site unknown) restriction endonuclease.
Statistics
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PSSM-Id: 430684
Aligned: 14 rows
Threshold Bit Score: 266.868
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CCY57820           4 LGFISEDDFTKHVAATIAQYDKKLLPiNIEKFNSNIVDPVKMIFDKNVYQYSWDELIQNEIFRQRDKSANNDIGYFHQRI 83 
WP_015189690       4 LPYISDNDLRKAVKRVVDCILSTQQR-QEAEMYRNVIDPFSAIFDGAVQGFSLEDWLQKERSRQIQKTVQNQIGNFHENI 82  Gloeocapsa ...
WP_014967011       4 VSFLDDTHLFNCLIDLHKTYVSCKNNmTLSKFYKNKIDPIKLQFDMTFNNLNLEEYINLEVTRQNDKTISNAIGHFHQEL 83  Gottschalki...
WP_013453896       6 LDFVADEHLLKCVENLHNSYLKAKENiSKKTFYKNKVDTIKLIFDSKFNNLDEEEIIETEVLRQIDKSINNSIGTFHEEL 85  Marivirga t...
WP_014085355       6 VDFVSDDHFLKCVANLHIAYLKAKNNvTKKHFYSNKVDTIKLTFDAKFNAIDEESLIRAEILRQIDKSINNSIGTFHEQI 85  Flavobacter...
WP_013620575       6 LSFISDEHLLSCIENLHRSYLKAKVNvTKKKFYKNKIDTIKLTFDAKFNDLDEETLIKTEINRQIDKSINNSIGTFHEQI 85  Cellulophag...
WP_014797669       6 LAFISDDDLYKHVLETVEKYS---FEmDLKKFNSNLIDPIKLTFDSIVYEQSYEDTIENEVLRQLDKTNSNLIGYFHQNI 82  Bernardetia...
WP_013182740       5 LGFIRDSDLYDHVKKTVLNYR---FDiDLKSFNKSLVDPIKLTFDSKIYQRSIESVVEDEVFRQLDKSNTNQIGYFHQNI 81  Waddlia cho...
jgi:Cal6303_3718  12 LGFISNENIYNHVQETIKKYR---FSiDLIEFNKNLIDPIKLTFDAKVYRKSIEFVIESEVLRQIDKSNTNHIGYFHQNI 88 
WP_012855313     343 LDFIKQNDFEEHVKETIKSYNETLKKiDLRKFNANVIDPIKLTFDKNLFKKTWEEVVESEIARQRDKSNTNAIGYFHQYM 422 Metamycopla...
CCY57820          84 FQYI-KDCRVPdngkEGGWDVIfhneegialpdgDRVRTVYVEMKNKHNTMNSSSAGKTYIKMQNQLLQ--NDDCACFLV 160
WP_015189690      83 LSSI-PGWQKL----RQGVDIC------------NEERKIIAEIKNKYNTVKGSDKVGIYDYLLSFLEKpqYHNFTAYYV 145 Gloeocapsa ...
WP_014967011      84 LGGI-SGLESLg--vGGGCDIR------------SLDNTIFAEIKNKHNTMNSSSQESTYQKLIKFADE--YPNATCYLV 146 Gottschalki...
WP_013453896      86 LGGI-DGYEKg---dLSGFDIK------------AEDDTLFADIKNKHNTMNSSSSESLFQKLARYADD--YKQAKCYWV 147 Marivirga t...
WP_014085355      86 LGGI-AGFEVg---nLSGFDIK------------ATDNSLFADIKNKHNTMNSSSAEALFQKLSRYADD--YKKSKCYWV 147 Flavobacter...
WP_013620575      86 LGGI-TGFEIg---nLSGFDIK------------ATDDTLFADIKNKHNTMNSSSAESLFQKLAKYADT--YKKANCYWV 147 Cellulophag...
WP_014797669      83 FKYFsDDWNVP----KHGYDIE------------NLKDRIFVEMKNKHNTMNSSSSAKTYMRFQNTIIK--DRNATCLLV 144 Bernardetia...
WP_013182740      82 FKYLhQGWKVP----EKGFDVI------------NEEKKVFVEMKNKHNTMNSSSAKSTYIRMQNKILS--CPDSVCYLV 143 Waddlia cho...
jgi:Cal6303_3718  89 FRYLsNGWTVP----VQGYDIV------------NTVLMYYVEMKNKHNTMNSSSAQKTYMRMQNTLLS--NPQATCMLV 150
WP_012855313     423 FKYI-KNCIVP----KTGFDVIyt---------dFNNHKICVEMKNKHNTMNSSSSQKTYINMQNHIIN--HSNDECFLV 486 Metamycopla...
CCY57820         161 EAIAKK----SQNIKWTtTVNG-TSVSHKRIRRVSMDQFYALVTGSDTAFYDMCMELPKTIAK 218
WP_015189690     146 EIIPKNrgfyDKPFAPS-SRDStRRPVNENIRQISGQAFYDLATGTSGALSMLFNVLPDVISE 207 Gloeocapsa sp. PCC 7428
WP_014967011     147 EIIATQ----SQDIQWQgTFNG-TYYSHPKVRRISADRFYALVTGKQNAFYELCSAIPKATQI 204 Gottschalkia acidurici
WP_013453896     148 QILAKK----SFNEKWFaEING-KEYSHSRVYKISGDQFYSLLTGQEDAFFKLYKNLPLAISD 205 Marivirga tractuosa
WP_014085355     148 QVLAKT----SFCELWKgDING-KEYGHSRVYKISGDQFYALLSGQKDALFQLYKSLPIAIND 205 Flavobacterium branchiophilum
WP_013620575     148 QILAKN----SFNEKWFsEING-KEYSHSRVYKISGDQFYKLLSGKENALFELYQVLPQAISD 205 Cellulophaga lytica
WP_014797669     145 EIIAKH----SQNIPWIvTLDKiKQSSNQSIRRVSIDKFYEIVTKDKFAFQKLCQILPTVIKD 203 Bernardetia litoralis
WP_013182740     144 EVIAKE----SQDIVWKiSNDG-SILSDPRIRRMSIDKFYGLVTNDPQSFKNLCSVLPSVLDD 201 Waddlia chondrophila
jgi:Cal6303_3718 151 EVIAKR----SQNIVWRvSLDG-QAVSNERIRRVSIDKFYELVTGSRVAFKKLCEKLPLIIQD 208
WP_012855313     487 EVIAPK----SRNIPWElSVNG-NHCKAENIRRVSIDKFYEIVTGESDAFYKLCKQLPITIEK 544 Metamycoplasma hominis
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