Conserved Protein Domain Family
DNA_pol_B_exo2

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pfam10108: DNA_pol_B_exo2 
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Statistics
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PSSM-Id: 462958
Aligned: 24 rows
Threshold Bit Score: 201.302
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q0K954            48 DFLPHYLQRIAAISCV-LRrthrdGSAVF-HVGSL---GTPEDG------EATLIQKFYELIARYSPQLVSWNGGGFDLP 116 Cupriavidus...
WP_011715184      55 PYLKTALCRFISIAAVvRRq----HQDGTiTVTLMslpEEVADTqapyakEDAVLSRFLQGVGEKKPQLVGYNSISADIK 130 Magnetococc...
Q8KBU0            55 PYLKTVMCRVISIAALvRKr---vKDGVTlKLISLpglNVSEQA------EGEIIRQFLEAVGKQKAQIVGFNSSNADLP 125 Chlorobacul...
jgi:Anae109_2768  59 DFLPLPYHRPVAGCLLeAV-----EDGGIvRVADVsawTDRRGD------EASFLAQTWERVAGAA--LVTFHGKGFDLP 125
Q7MSB0            44 SFLPYPFHKIVSIAAViAD-----DYGRFiKVGGFaqeGS----------EKEILGAFLDYLNAKQPKLVSFNGRGFDLP 108 Wolinella s...
Q0P9C2            50 EFLPLPYHKIISICAVlSD-----NFGKFiKVNKI---DGQN--------EKEMIENFFNFIENYEPKLVSFNGKNFDMP 113 Campylobact...
Q2GD35            49 PFLRQPFHKVIVISLLkATltcknDCEFF-QLKKIasgDIQCYS------EKELVQFFFDHVCKSLPRLVSFNGRTFDLP 121 Neoricketts...
Q2GGZ0            52 PFLRQPFHKVVAISFLkADikkmgEYESF-HLQEIrsgGKIDSV------EKDLLKGFFQYVSSLRPRFVSFNGRTFDFP 124 Ehrlichia c...
Q2GKZ3            53 SFLRQPFHKIVAISFLrADikrggGYESF-TLQEIrsgGTALSS------EQELVKGFLSYVSAIKPRFVTFNGRTFDFP 125 Anaplasma p...
wsu_vmp:AMF_624   57 PFLRQPFHKIVTISFLrADirrdlGCEHF-TLREIrsgGTVAST------ERELVRGFLGYLSAIKPRIVTFNGRTFDLP 129
Q0K954           117 VLHYRGLVNGVTAPRYWEMGEGrdddsrDFKWN--NYISRYHMR-HLDLMDLLAMYQ-PRASAPLDDLAKLCGFPGKLGM 192 Cupriavidus...
WP_011715184     131 AMLQRGIIRGMHQPKFAHRPN--------KPWEgvDYFARGGDW-HVDLKEVVSGW--GQFTPSLHEMATLSGIPGKMDV 199 Magnetococc...
Q8KBU0           126 ILYQRALANRVSAPTFCHRPD--------KPWEgvDYFNRYSDF-SIDLKDLVGGY--GKAMPSLHELASSLGIPGKMGI 194 Chlorobacul...
jgi:Anae109_2768 126 VLELRSLKHSVPTPAWFSAGRR------PGAND------------HFDLKELLSAHG-SGGAAPLDLYAKLVGLPGKEDV 186
Q7MSB0           109 MLLLRAMKYNLSAYAYFESDNPal---nKNKWE--NYRQRYSERfHVDLYDTLGHYGaGR-SMRLDLVCAMSGLPGKFDV 182 Wolinella s...
Q0P9C2           114 VLVLRALKYNLKAATYLDTQS--------DKWN--NYKTRFSELkHCDLLESLGSNG---RGIKLDTLCSMVGLPGKYDV 180 Campylobact...
Q2GD35           122 VLKYRAMRYGVVARNFYHSGD---------KWN--SYNNKYSANwHTDLIDLLSEYG-VSARVKMSEVCAVLGLPGKLGI 189 Neoricketts...
Q2GGZ0           125 VLKYRAMVHGIQAGCLYKIGD---------KWN--NYFQRYSIDwHCDLLDYLSDFG-TSARIKMNEVCSVLNFPGKFGL 192 Ehrlichia c...
Q2GKZ3           126 VLKYRAMLHGVQAGYLYKAGD---------KWN--NYFQRYSVDwHCDLLDYLSEYG-ASAKVKMHEVCAVMGFPGKFGT 193 Anaplasma p...
wsu_vmp:AMF_624  130 VIKYRAMVHGVQAGYLYNSGD---------KWN--NYFQRYSTDwHCDLLDYLSDFG-TSARVKMHEVCSVLNFPGKIGI 197
Q0K954           193 DGSKVWQAFQAGQLDEIRAYCETDVVNTYLMYCRFQLMRGGMSPREFDIEMEFVQESL--AEL----PGEQ--WMEYLQA 264 Cupriavidus...
WP_011715184     200 AGDQVPQMWLDGRLADIVAYNEFDALTTYLLWLRMVHFSGHFDGATYQNEQNLVRALIerEGA----QKPH--LLAYLQQ 273 Magnetococc...
Q8KBU0           195 DGADVIDLWRSGDIRKIVEYNQFDALSTYLVWLRTAYFSGMLTEDEFVQEEHKLETLLlqEIEs---GSEH--LALFLDA 269 Chlorobacul...
jgi:Anae109_2768 187 AGEDVQALYATGALDRIAAYCMTDVVQTFLLFLRYRLLEGSLSPDGYAESAALARAALpsLFRrrlpLGEHaaLDGFLER 266
Q7MSB0           183 HGDEVYRLYFEGKRGEIDEYCQSDVLNTYWLYLKYELLAGNLTLEDY---YATLAEFMhkIPQ----GRSY--SEIFLQY 253 Wolinella s...
Q0P9C2           181 HGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLcaKKS----DRSY--TEVFAKA 254 Campylobact...
Q2GD35           190 DGAQVAHMYDAGRITEIRNYCEIDVLNTYLIYLTVLRHQGTVSEESYARNLHELMRYL--ERN----EKDNpsYLPFLRS 263 Neoricketts...
Q2GGZ0           193 DGSKVTALYDSGKISEIRDYCETDVINTYLVYLRMMHYQDRITTLSYNDSINDLLSYL--DSS----GREH--FKQFRIE 264 Ehrlichia c...
Q2GKZ3           194 DGSAVAELYDNGKLSMIRDYCETDVINTYLVYLRLMQHQEKIKTDCYNSCIVSLLEYL--SKS----EKEH--LLAFKAA 265 Anaplasma p...
wsu_vmp:AMF_624  198 DGSEVARMYDCGQLSEIRDYCESDVINTYLVYLRLMHHQGRVTSDSYNECIKDLLEYL--QTS----GNKH--MLEFVAE 269
Q0K954           265 F 265 Cupriavidus necator H16
WP_011715184     274 W 274 Magnetococcus marinus
Q8KBU0           270 W 270 Chlorobaculum tepidum
jgi:Anae109_2768 267 C 267
Q7MSB0           254 A 254 Wolinella succinogenes
Q0P9C2           255 C 255 Campylobacter jejuni
Q2GD35           264 L 264 Neorickettsia sennetsu str. Miyayama
Q2GGZ0           265 W 265 Ehrlichia chaffeensis str. Arkansas
Q2GKZ3           266 W 266 Anaplasma phagocytophilum str. HZ
wsu_vmp:AMF_624  270 W 270
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