Conserved Protein Domain Family
RNR_activ_nrdG3

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TIGR02826: RNR_activ_nrdG3 
anaerobic ribonucleoside-triphosphate reductase activating protein
Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 274317
Aligned: 10 rows
Threshold Bit Score: 196.415
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAD35469         1 MYVNRIGTFRDHPDLYGVSVYFQGCDAKpkCYMCHNPETWHLSEEYKRPSEVVTKIIDEKLSSLLryfpkaALVFLGGEp 80  Thermotoga ma...
AAP95362         5 RFCSEQIVWQEVPRETSLAFLITGCPLG--CKGCHSSDSWKAGSGQILTESYLAECLAKYDRLIS------CVLFMGGE- 75  Haemophilus d...
uhmanoa:IL0187   9 HYSAEQVVWQEVPGEVALAYTITGCPVG--CKGCHSVDSWPVGSGSPLTQEHLAQQLQKYRGLIT------CVLFLGGE- 79  Idiomarina lo...
tigr:CPS_0093    4 NCITPSVVFQEVPNEISLCFSITGCKVG--CKGCHSTELWQEDNGVLLTNTNFTQWLKKYQGLIS------CVVFFGGE- 74  Colwellia psy...
CAE80387         2 NIYKHDIVFQEVPNHISLAFYVCGCPLK--CPGCHSPELWTEKTGTPLTPIMFLELVRRYRQRIS------CVLFLGGE- 72  Bdellovibrio ...
WP_012031227     5 HFITEEIVWQEVPNEVSLAFLCSGCPLA--CKGCHSAYSWAADRGTLLSADYLENRLDRYRDLIS------CVLFLGGE- 75  Dichelobacter...
WP_014708598     3 KFVDTDIVFQEFPDEVTLAINLSNCPCR--CPGCHSTFLWK-DVGNPLTTEAIEQMLAENSERIT------CIGFMGGD- 72  Prevotella in...
WP_014224446     3 KYVSYDIVFREIPDETTLALNLSNCPNG--CPGCHSLWL-QEDRGEPLTEEVLAGLLGCYGNAVT------CLCFMGGD- 72  Tannerella fo...
WP_013064511     3 KYVNTGIVFQEIPDEVTLAINISNCPCR--CPGCHSYYLW-EDIGLPLDTEAIDAFVEKFGTDIT------CISFMGGD- 72  Prevotella ru...
WP_015918818     1 MYINRIGTLRDHPDLYGVSVYFQGCDAMpkCHMCHNPETWHLSERFKRDPEDVVKTIDEKLSDLLryfpkvALVLLGGEp 80  Thermotoga ne...
AAD35469        81 lapYNREEMLSLSKMFKE--KygeRLTVVLFTWRLPKDivkenLLKYVQYVDEFVMGRYLHTYRRDGFPASkNQIHIDRR 158 Thermotoga ma...
AAP95362        76 ---WHLQKLLSLLKLVKA--Q---GLHTCLYTGLEQSEl----PADLLAELTYLKTGRWIAERGGLTSLTT-NQHFIDLR 142 Haemophilus d...
uhmanoa:IL0187  80 ---WQPTALLKLLKQVRN--E---GLETCLYTGYESv------SISLREQLTYLKTGPWIAARGGLESPTT-NQRFYDLR 144 Idiomarina lo...
tigr:CPS_0093   75 ---WQANALIEKLIIAKN--H---GLKTCLYSGEKHi------DINISQHLNFLKTGAWHETLGGLDSPTT-NQVFRNVI 139 Colwellia psy...
CAE80387        73 ---WRQDELLEFLKLAHQ--E---DLLTALYTGLDHi------PHELQQHLDFLKTGPWITARGGLWSPTT-NQIFRDLR 137 Bdellovibrio ...
WP_012031227    76 ---WEAAALQQLLMICQQ--R---NLKTCLYTGLEMAEls-alPVNILPHLTYLKTGRWIESLGGLDCPTT-NQRFLDVR 145 Dichelobacter...
WP_014708598    73 ---SEPEAIDSLAAYMRTh-Ha--ELKVGWYTGRTTLS-----PDIQLPHFDYIKIGPYIRHLGGLDSRRT-NQRMYRIT 140 Prevotella in...
WP_014224446    73 ---ADPYEVVRLAAFVKQ--Ta--TIKVGWYSGRPALP-----SDFPVHHFQYIKLGPYIERLGPLSSPTT-NQKLYRIT 139 Tannerella fo...
WP_013064511    73 ---AEPKAVNQLALYIREv-Hp--EFKVAWYSGKTVIS-----SAINKRDFDYIKIGPFIKHLGPLKDPKT-NQRLYKIK 140 Prevotella ru...
WP_015918818    81 lapYNREDTLLLSKTFKEkfKd--RLVVVLFTWRLPKDivrenLLEYVQYVDEFVMGRYLHTYRREGFPASrNQLHVNRE 158 Thermotoga ne...
AAD35469       159 TFERMIEAV 167 Thermotoga maritima MSB8
AAP95362       143 TGENLNHLF 151 Haemophilus ducreyi 35000HP
uhmanoa:IL0187 145 TRQLLNCKF 153 Idiomarina loihiensis L2TR
tigr:CPS_0093  140 SGEKLNHLF 148 Colwellia psychrerythraea 34H
CAE80387       138 SGETLNHLF 146 Bdellovibrio bacteriovorus HD100
WP_012031227   146 TGQNLNYLF 154 Dichelobacter nodosus
WP_014708598   141 KENKMNDIT 149 Prevotella intermedia
WP_014224446   140 DDGEMIPMA 148 Tannerella forsythia
WP_013064511   141 EDGEMEDVT 149 Prevotella ruminicola
WP_015918818   159 TFEKMIRAV 167 Thermotoga neapolitana
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