Conserved Protein Domain Family
M3_fam_3

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TIGR02290: M3_fam_3 
oligoendopeptidase, pepF/M3 family
The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Statistics
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PSSM-Id: 274069
Aligned: 14 rows
Threshold Bit Score: 692.919
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAO80484   6 TWDLDSIFPNGSeSKELSQRMTQLTEQTKEYHQLITEW-TPESAQG--KEQFAEILTLQGKISNGFSQCNSFLTALISAN 82  Enterococcus faecal...
BAC94242   5 SWDLSIAYADLT-DVRIEQDIELIEQCIKLLNTQASQReV--------VSVMQNAIVTREAAGRLLSTVYTFANCYTSVD 75  Vibrio vulnificus Y...
CAE80980  16 AWNLESEYPSYN-SPEFLSEFDLVKSKVDQLEKDVKSLkTPFD-ND--VEKIQKIWIDVEATQVLVGNMSTFLNCHLSVD 91  Bdellovibrio bacter...
AAS12515   8 RWDLKNIYPDFK-SKEYAESKKKIPALTSKFEKHLKAf-SDKD--L--KKWLVKALDILNEFNAEAETLYAYASAVYTTD 81  Treponema denticola...
AAM25618   2 RWSLEALYTSFD-SEEFQKDVEKITSSIEHIRSWTEENfTTYE-KS--KEKLEYYIRFKNELGDLMVKVRGYSALSLSVD 77  Caldanaerobacter su...
AAS81843   4 TWDLTPLFPGLE-SPEFQRAWEGLKGRIGELKGLLER-----------EAPLPEVLAALDAFLEEATPLRAYLYARYSAD 71  Thermus thermophilu...
AAK25275  12 EWNLADLYVGRD-DPRIETDLAAAKAANDELASLEGMFlEARKEPErlGVLLDRGITLYEQATNGLWGVGAYAALAASVA 90  Caulobacter crescen...
AAR35249   9 LWDTSPLYASAT-CEDIDRDLSRGAAEAQAFRERYAGKvATLDAAE-----VADAVRRYEDLGELLAKPQLYAHLLFAAD 82  Geobacter sulfurred...
AAS81510   2 EWNLDDLYAGPA-DPRIEEDLKAALALAQGLDP--Q---GLLDPKG-----AQDLLGRYEKALELAYKPLNYASLYFATR 70  Thermus thermophilu...
CAF28724  11 KWDLHDLIDDKS-TSTFANLVNGIKKDVGEFEANRQILkPDLDGPS-----FEGLVHKLENIMDVTSIVNSFAQLKYAAD 84  uncultured crenarch...
AAO80484  83 TNDTKAKILSGDLYNLLPAIQLAETIFTKKITEISAEHWQALLA--EEPFKTMAFRLNELRRDGKKLLSEQEENIINTLS 160 Enterococcus faecal...
BAC94242  76 VTHPQAKALVGRMAKLSSEMEQAFSPYQLALMHADDDFIADVLEsnNPDVAGQVFSIAQLRKLADQSLSVSEEQLLSAMQ 155 Vibrio vulnificus Y...
CAE80980  92 STLSEAQAKKSEVMALSSRMWQILIPVDNFMKRCSEETLNKILS--HPELTPAKFDWSQERTQKPFMLSDDEETLLQALS 169 Bdellovibrio bacter...
AAS12515  82 TENKEALSELNSISALFVPFTPLGVRFSNILASVSKEVKALIKN--DKDLKYASFYLEDTLFWQKKQMSEEEESLAADLA 159 Treponema denticola...
AAM25618  78 VKNEKALKALESLENISTMLAEPETKFKRWLLNMP-NLEETIQS--SSYLKEHEFFIKETVKEAMHLLSEKEEMIIAKMK 154 Caldanaerobacter su...
AAS81843  72 TRDEAALAKLSELEILFLDFQRLRPRLTRYLA---------LKD--PEEAGPYRLLVEEAKEEALHMMPEGEEVLAAELS 140 Thermus thermophilu...
AAK25275  91 RDDPAWAKFEGDLRARSSQIAAESLFFTLELNQLEDSEIAKALQa-HPDAARWAPWLRRVRLSRPHELSPELERFIVDK- 168 Caulobacter crescen...
AAR35249  83 SEADDHKRLSQRTAEFGNLMSRELLFFDLEIMEIADDRFAGLLS--DELLAPYRHYLESVRRFRPYTLKEREEQLLKMKS 160 Geobacter sulfurred...
AAS81510  71 TQDPEAKTLLDRVRSRFTEVRNRLVPLEVALRKLPEEAFQRLLA--HPGLADLGHFLKRQRAYAPHTLSEREEELLNLKA 148 Thermus thermophilu...
CAF28724  85 TSSNEAAALVLETEKMSSQISNQVLFFDLWFMKTVDTNNAERLI--DSLPSVYREYLKHKRLVAKYSLNESEEKIINTLE 162 uncultured crenarch...
AAO80484 161 LDGLNAWSTHYDTIVASIVIPFEeKDG----SVTELSAGQAFNrMMGDPDKEVRQRLFTAWEKAWSGKASILADTLNHLD 236 Enterococcus faecal...
BAC94242 156 VDGRDGWGRLYDNLTGTLKITLDaEDG----TQETLGFSQAAS-LLYGADFSRQEPAWRGIQNAMATHRETFAAILNALS 230 Vibrio vulnificus Y...
CAE80980 170 MPGLHAWGELYSNLSGTMRCEMKfKDR----T-ETVGLAKASA-LIRSQDEETRHVAWTSIQEAWTTHKETASAILNALS 243 Bdellovibrio bacter...
AAS12515 160 RSGASAWSKLQSTMTSTASCIWDeKTK----E-EKT-LVQLRA-MAYDKDAAVREKAFKKELELCKSIEKPVAAALNGVK 232 Treponema denticola...
AAM25618 155 NTGSEAWAKLHDLLTSTLLVDINiNGE----E-KKLPLSVVRN-MAYDKDPYIRKTAYFAELNSYKKIEDASAACLNGIK 228 Caldanaerobacter su...
AAS81843 141 LSGRAAWDKLHESLTSQITAVVDg---------EEMPITKVRN-LYFHPEEEVRKKAYEAELKAWEAHEVPLAFALNGVK 210 Thermus thermophilu...
AAK25275 169 APAVANWVRLYDETLAKLTAKAG---------DETLTLAEALN-RMSDPSVERRKAAADGLAAALEARASTQALVLNTLA 238 Caulobacter crescen...
AAR35249 161 LTGTDAFSRLFDELSASLRYRMElEG-----EERDFTGEELLG-LLHHPEAGVRERAFATFLNRHEENGIVFSSVFNNVA 234 Geobacter sulfurred...
AAS81510 149 LVGRSAWSQFYTEYTGRFRFRVG---------ERELTEMEVRA-LRRDPDPEVRREAHRALYGKLLAEAPTLSAVFNAVY 218 Thermus thermophilu...
CAF28724 163 VTGTGALVKIYDRMTNNFEFSVVkKHGktrrIKIFKNKEKLLS-LVRSPKAYERETAYKALFKTYEKNSGVLGEIYQNLV 241 uncultured crenarch...
AAO80484 237 GFR-LSDYKLHG---TTDYLENPLNYNRMSQETLTVMWETIQKNKQ-PFVDFLTRKAQLFGKEK-MDWQDQDAPIILGDl 310 Enterococcus faecal...
BAC94242 231 GWR-LTEYQKRShqrNIHFLEPSLYESRIEAQTLETMISVAKESRS-VGQKAGKLMARVHGLEA-MKPWNHLAAMPAFDg 307 Vibrio vulnificus Y...
CAE80980 244 GWR-HEVIKKRSqvkPAHYLDQSLFYSRITKETLDAMLTACYENVD-MSRRANLAMAKLMGKKA-LDPWDLLAQSPISAs 320 Bdellovibrio bacter...
AAS12515 233 GTS-ITLNKRRNw--KGGTIEKSVKQANITQKTLDSLISAIEDSLP-SWRKYLKAKAMLLGKKE-LPFYDLFAPVSKS-- 305 Treponema denticola...
AAM25618 229 GEV-LTVTELRKy--SS-PLEMTLQRSRMDSETLEAMLEAIEEYLP-EFRRYLKEKARLLGHKDgLPFYDLFAPVGKL-- 301 Caldanaerobacter su...
AAS81843 211 GEA-SVLNRRRGy--RD-DLEPTLHENRITRKALKAMLEAVGESLP-LFRRYFLLKAKALGKER-LDWWDLFAPVGR--- 281 Thermus thermophilu...
AAK25275 239 FEK-QVEDRWRR---YETPAQSRHLANEVDADAVDALEQAVVEAYPrLSHRYYALKAKVMGVAT-LDYWDRNAPLTAAAp 313 Caulobacter crescen...
AAR35249 235 LDH-SQELELRG---YRHPMEPTNLGNDIPEEVVNRLMDVSEANYG-LARDYFRLKARLLGLPK-LKNTDVYAPVGDND- 307 Geobacter sulfurred...
AAS81510 219 LDY-LQDLRLRG---YRHPLEPVALRDEVEVREIEALLEATKAHYP-LVERYYRWKAGRLGREK-TPSEDLLAPLGEKP- 291 Thermus thermophilu...
CAF28724 242 TQWrDENISIRG---FKSPISVRNIYNNIDDTTVETLLAVCKENAH-LFHDYFVEKAKLIGMKK-LRRYDLYAPISSKNi 316 uncultured crenarch...
AAO80484 311 eEKTYSFDQAAAFILENFRKFSPKMADFAQMAFEKSWIEAEDRPGKRPGGYCTELPETQESRIFMTFGNSINEVATLAHE 390 Enterococcus faecal...
BAC94242 308 eAKVYGFDEAIELIRNAFAQVNPEMASFVDLMVENGWIDAAPSENKRLGAYCTKLAATRTPLVFMTWSGSRSDLLTLAHE 387 Vibrio vulnificus Y...
CAE80980 321 kAERS-YEEGLKMIKDAFGQASPEMAQFVDMMAEKHWIEARVLPNKRNGAYCTGFRKKREPRVFMTYMGSNSDISTLAHE 399 Bdellovibrio bacter...
AAS12515 306 -FPTYTWEEAKALVIENFSSFSKNMGDFAKKAFASNWIDGEVRNGKVGGAYCTHFPVTKEPRVLCNFDGSFSSVSTLAHE 384 Treponema denticola...
AAM25618 302 -DKKFTFDEAKEFIVENFNSFSEDLAQFAKKAFENSWIDAEPREGKRGGAFCYNLHPIKESRILANFDGSFSNVLTLAHE 380 Caldanaerobacter su...
AAS81843 282 -GRRWSLEEARAFIPAKLAALVPNAAKVAEMAFHERWMDLLPRKGKVGGAYCMARGGGK-SLILANYEESFESVSTLAHE 359 Thermus thermophilu...
AAK25275 314 --RAYAWDEAKSMVLESFQDLAPKFADAARVFFDKPWIDAMPRPGKQSGAFAHPVTADRHPFVFMNYMGERRDVLTLAHE 391 Caulobacter crescen...
AAR35249 308 --RTYSFDEARELVLEAYGRFHPRFGEMAAAFFDERRIDVLPRPGKSGGAFCMGMTPHLSPYLLLNYTGNLRDVATLAHE 385 Geobacter sulfurred...
AAS81510 292 --K-VPFAEAQALVLEAFRRFSPELAEIAREFFEKRWIDVYPRPGKRGGAFCSGGLPSTHPYILLNHTDDLDSAHTLAHE 368 Thermus thermophilu...
CAF28724 317 --PRITFRNATKLVLDTFHKFEPRFGQYTERLFKENHIDSEIRNGKTGGAFCYTVAPKRTPYVLLNFDGMMRDVSTMAHE 394 uncultured crenarch...
AAO80484 391 LGHAFHSSVMWDLPSLNREYAMNVAETASTFAELIVADATLKEAKSDVEKINLLDTKMQNAIAMFMNIHARFIFENNFYQ 470 Enterococcus faecal...
BAC94242 388 LGHAFHNWVMKDMPLCQTRYPMTLAETASIFAENIVQDYLIAQAVTAEEKLEMLWEELSSAYALTINIPVRYEFEKAFYE 467 Vibrio vulnificus Y...
CAE80980 400 LGHAYHSWVMRDMPIAECGYPMTLAETASIFSETLLHDVLLTNAKTREEKIEFAWGEMDRATAFLLNIPARYDFEKSFYE 479 Bdellovibrio bacter...
AAS12515 385 LGHAFHFNVVKDMPVINQSYPMTLAETASIFAETILFESEIKKMNE-EQKTALLEIHLQDGCQVLIDILSRFYFERSFMD 463 Treponema denticola...
AAM25618 381 LGHGYHGHLLANETLINSRYPMPIAETASIFNEHIIVNSALKTASK-EEKLSIIENSLQRSTQTIVDIYSRFLFEDEVIK 459 Caldanaerobacter su...
AAS81843 360 LGHAYHNFALKEAPASLRRVPMTLAETASIMNETLVVEAALKEASP-EEGLLILDAYLQGAAQVVVDIHSRFLFESWVFQ 438 Thermus thermophilu...
AAK25275 392 LGHAVHQTLCQPLGTLLADTPLTLAETASIFGEGLVFDRLLAEASPE-DRKGLLAGKIEDGLNTVVRQIAFHRFERRFHE 470 Caulobacter crescen...
AAR35249 386 LGHGLHFELARKQTMLNYHAPLPLAETASVFGEMLLTRFLLQRESDPAMKISLLCAKIEDIIATTFRQNVLTRFEERMHR 465 Geobacter sulfurred...
AAS81510 369 LGHGVHFYLARKQRLLNFGASTPLAETASVFAEILLDDLLLERLSG-EEKTLLLAERVEDAINTLFRQVMYTFFEQRSLE 447 Thermus thermophilu...
CAF28724 395 FGHAIHSMFASDKPILVAHAPLPLAETASVFGEMLLNEEIYKKLKRQ-KKKIFLAEQIDDIYATVMRQAFFTLFEIEAHN 473 uncultured crenarch...
AAO80484 471 ARQKGLVAEEDITELMLAAQKESYKDSLGSY--HPHFWASKLHFFIDDvpFYNFPYTFGYLFSMGIYAYANQQGSSFEDQ 548 Enterococcus faecal...
BAC94242 468 RRASGELSADDICQLMSETWQAWYGDSMSES--DPYFWASKLHFSISEisFYNYPYLFGYLFSKGIYAQRAAKGESFYRD 545 Vibrio vulnificus Y...
CAE80980 480 MREKRTVSADELSKLTDDAWSKWYGSTLSEN--DKMYWATKLHFSMSGisFYNYPYTFGYLFSISVYARREELGKDFMQT 557 Bdellovibrio bacter...
AAS12515 464 EREKHELTAEDCCRLMLEAQKKSYGNGLDSKllHPYMWLVKGHYYSADlgFYNFPYAFGQLFALGLYNRYKKEGEKFTSV 543 Treponema denticola...
AAM25618 460 RRKDHSLSVEELKQIMIEAQKKTYGDGLDQNylHPYMWINKPHYYDADlnYYNFPYAFGELFVKGLIYKYNQEGKKFVEE 539 Caldanaerobacter su...
AAS81843 439 RRKARELSPREFKELMLKAQEEAYGEALATR--HPYMWAVKGHYYGAD--FYNYPYTFGLLFGLAVYQEAK-EDPGFAGR 513 Thermus thermophilu...
AAK25275 471 ARQDGELSPDQIGALWLEVMGESLGPAVKLNagYEHYWAYVSHFCHAP--FYVYAYAFGDLLVRGLMEKRREDLERFAPL 548 Caulobacter crescen...
AAR35249 466 ERQEGLLTSSRLCDLWWEENGRLYGDAVDMIppYRWGWSYISHFIHAR--FYCYSYTFAELLVLSLYRNYLEQGERFIPT 543 Geobacter sulfurred...
AAS81510 448 ARKEAALSPEAFHALWDEEQRRLYGEAVAWTelDRAAWAGIPHFVHYR--FYTYSYALGYLVVLALYGKYREEGEAFVPK 525 Thermus thermophilu...
CAF28724 474 QIVEKGVTIDNISDLYIKNLKTQFGDSIRISedFKWEWLYIPHFYHTP--FYCYAYSFGNLLVLSLYQQFREEGNSFISK 551 uncultured crenarch...
AAO80484 549 YIALLRDTASMTSEELAKKhLNVDLTKPDFWQAGIDQVLKDVEQFMTL 596 Enterococcus faecalis V583
BAC94242 546 YVALLRDTGAMMAEEVVARhLQMDLTQADFWQQSIERIREKVDEFEQL 593 Vibrio vulnificus YJ016
CAE80980 558 YINILRDTGRMTAEDLVQKhLGEDIRRPEFWRKSIAVINRKIEEFEKL 605 Bdellovibrio bacteriovorus HD100
AAS12515 544 YEDILRKTGMTDAVKVTKS-AGFNIETPDFWKEGIKIFTDQISEFEKL 590 Treponema denticola ATCC 35405
AAM25618 540 YKNLLPQTGKKNLYDLGKI-VGFDLHSKDFWRKSLDVIKEEINQFISL 586 Caldanaerobacter subterraneus subsp. tengcongensis MB4
AAS81843 514 YEALLAESGRYRAKELALR-FGFDLESVDFWRRGIRVLEEKVAQLERM 560 Thermus thermophilus HB27
AAK25275 549 YEQLLAAGGTKTYVEALAP-FGLNPREKAFWAAGCAQLERLVDEFESL 595 Caulobacter crescentus CB15
AAR35249 544 YLSILESGGSLSPADTVRP-AGIDLADPHFWQKGYDFLAELIEELKGL 590 Geobacter sulfurreducens PCA
AAS81510 526 YLRILEAGESASPKEILAE-AGVELGSEAFFRYGFGVLESWLKALP-- 570 Thermus thermophilus HB27
CAF28724 552 YIKILSAGGSEKPETLLKD-SGFDITKASFWQQGFDLIKMKIDKLKED 598 uncultured crenarchaeote
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