Conserved Protein Domain Family
NUDIX_MutT_Nudt1

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cd18886: NUDIX_MutT_Nudt1 
MutT homolog-1 and similar proteins
MutT homolog-1 (MTH1), also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 1/Nudt1, is a member of the NUDIX hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the NUDIX family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the NUDIX motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved NUDIX motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.
Statistics
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PSSM-Id: 467596
Aligned: 58 rows
Threshold Bit Score: 108.09
Created: 7-Mar-2018
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
Feature 1:NUDIX motif [structural motif]
Evidence:
  • Comment:G[X5]E[X7]REUXEEXGU, where U is a bulky aliphatic residue (usually Ile, Leu, or Val).
  • Comment:The NUDIX motif contains many of the active site residues of NUDIX hydrolases.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      ##        ############                         
AAP10005    3 KYTICFIRKs--dKILLLNRNKKpnmGMWNGVGGKIEenETPYEGIIRETFEETGIelsSVTYKGTVVFKgkde------ 74  Bacillus cereus AT...
AGA57173    3 KYTICFIQQe--dRFLLLNREYPvwmGMWNAPGGKLEpgETPRASALREIAEETGLlleTVDFRGIVTWFtgg------- 73  Thermobacillus com...
EJW16315    3 IYNICYIQRg--nEVLLLNREKPswmGCWNGIGGKLEtgESPRESMERELAEETGItpkDLTFKGIVSWMvdr------- 73  Paenibacillus alve...
ABN67797   11 KYTLGLIYCpetnEILLLNRYKSpwmGKWNGVGGKLDadETPLQCIVRETKEETGLdisTYKSRGVFTWKvkftegapqh 90  Pichia stipitis CB...
CCE87242   20 AFTWAIVVCeetsEVLLLNRQKApwmGRWNGIGGKLDegETPLQCIIREAEEETGLhiqEFHSKGIMRWIrdg------- 92  Millerozyma farino...
EEQ38361   27 KYTLGFIRSg--dHILFLNRQKApwmGRWNGVGGKLDtnESPYECIVRETFEETGLh--LPQYKDRGVMRwfr------- 95  Clavispora lusitan...
EGL83761    3 AYTLCFIRRd--nHILMLNRAKApwqGMWNGIGGKIDpgESPDTSMKREIAEEAGLn-iEPVLRGCVTWNvdh------- 72  Caldalkalibacillus...
ELK40573    3 TYTICFLMHq--nEFLLLNRRKPplmGRWNGVGGKLApnESPLACVLREVFEETGIpltSARYKGIVSWKldr------- 73  Brevibacillus agri...
EGV60015    7 KYTLGFIECketdTILFLNREKPphmGKWNGVGGKLEpgESSLECIIRETKEETGLvidNYISRGVLRWFnk-------- 78  Candida tenuis ATC...
CAI55968    4 RRYNLAVIRyr-gTLLLLNRLKKpyaGLWNGIGGKNEgdETAEMGMRREIFEETGL---NQNQYTLYNTGwl-------- 71  Lactobacillus sake...
Feature 1                                                                                     
AAP10005   75 pqaSEGMYVFVADf--pDGMQMNTplr------taEGLLEWKEIDWIldgdnRGVVSNLPKYLPTVItee------nkLK 140 Bacillus cereus AT...
AGA57173   74 -reFGGMYVYHAEl--pSDDRTDIpir------tpEGILDWKQTDWI-----LHPENMGITPNVPHCvrllt-agdgcFE 138 Thermobacillus com...
EJW16315   74 -trFGGMYLYAAS----VEESFTYdtpm----ktdEGILDWKRVDWImd-vhNQGVASNMPQVLQGMk---------sDM 134 Paenibacillus alve...
ABN67797   91 eppVGGMYLFTAAv---SKEVVDSyatpi--kyckEGVLDWKDMDWV-----MHPENYGVVDNIQKVletlfeadendLY 160 Pichia stipitis CB...
CCE87242   93 -ndLGGMYLFVAFv---DRKIVEEygapk--kfcnEGILDWKKLDWIl---hEENTGVVDNVKLMLNsffsa--sdkaLY 161 Millerozyma farino...
EEQ38361   96 -ngEDLGGVHIFTae-iSEAEKDAyktpk--sfchEGILDWKLLDWLlh-peNTGVVDNVKIMLQHLfeag---pesvWI 167 Clavispora lusitan...
EGL83761   73 -arYGGMYVYTAEldidIPYITPKkn--------dEGILDWKPISWV-----LDPENLGIVSNIPKF-----------LP 127 Caldalkalibacillus...
ELK40573   74 -tvLGGMYAFVAElp-dAWERFDTprr------veEGILDWVTLDWI-----LHPDNEGIAENVPRFlpyml-endepVE 139 Brevibacillus agri...
EGV60015   79 --eEDLGGVYLFTgs-vSKEVCNNyktq----strEGILEFKKRQWV-----LHPQNVGVVDNIKMIyeem---eqanEH 143 Candida tenuis ATC...
CAI55968   72 --dWHIDGEFIAGidvfLAEIKESvqlplypvgtrEGILQLFDEQWVls-eeNYGIVADLKVILPEVlakn----vkrYY 144 Lactobacillus sake...
Feature 1                               
AAP10005  141 HIFTYDnrnii--nyttaCLTEDDAN 164 Bacillus cereus ATCC 14579
AGA57173  139 LRCHYEg----------dRLIRTEEL 154 Thermobacillus composti KWC4
EJW16315  135 HCYDYHc----------iFEKGKLLN 150 Paenibacillus alvei DSM 29
ABN67797  161 TTRYDDit---------lLECKYHKG 177 Pichia stipitis CBS 6054
CCE87242  162 VSKYDKst---------lDSVAYYED 178 Millerozyma farinosa CBS 7064
EEQ38361  168 STYDNSv----------lESCTYTAN 183 Clavispora lusitaniae ATCC 42720
EGL83761  128 ALFEEQrmyehhcvyrgnRLVDYVRK 153 Caldalkalibacillus thermarum TA2.A1
ELK40573  140 HAFTYEg----------gRVIDYERV 155 Brevibacillus agri BAB-2500
EGV60015  144 NVFVAQydg-------ltFLKGYKLK 162 Candida tenuis ATCC 10573
CAI55968  145 TDFHGE------------QLIAYEAF 158 Lactobacillus sakei subsp. sakei 23K

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