1PG3,4ISB,4R0M,3KXW,1AMU,1MD9,1V26,2D1Q,2V7B,2Y27,3CW9,3ETC,3G7S,3IPL,3NYQ,4LGC,3WVN,5IE0,3R44,4WD1,5JRH,5C5H,5E7Q,3IVR


Conserved Protein Domain Family
AFD_class_I

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cd04433: AFD_class_I 
Click on image for an interactive view with Cn3D
Adenylate forming domain, Class I, also known as the ANL superfamily
This family is known as the ANL (acyl-CoA synthetases, the NRPS adenylation domains, and the Luciferase enzymes) superfamily. It includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases.The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain.
Statistics
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PSSM-Id: 341228
Aligned: 92 rows
Threshold Bit Score: 149.358
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1PG3; Salmonella enterica Acetyl CoA Synthetase complexed with substrates AMP analog and CoA, contacts at 4A.
  • Structure:3CW9: Alcaligenes sp. 4-Chlorobenzoyl-CoA synthetase binds 4-Chlorophenacyl-CoA and AMP; contacts at 4A.
  • Structure:3NYQ: Streptomyces coelicolor Malonyl-CoA Ligase binds Methylmalonyl-CoA and AMP; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                                 ##                     
1PG3_A        257 DPLFILYTSGSTGkPKGVLHTtg------gYLVYAATTFKyvfd---yhpgDIYWCTADvgwvtghsYLLYGPLAc---G 324  Salmonella en...
Q9Y2E4       1133 TLAYLDFSVSTTGmLAGVKMS---------HAATSAFCRSiklqcelypsrEVAICLDPyc----glGFVLWCLCsvysG 1199 human
4R0M_B        175 DAALLLFTSGSTGxPKGVILThh------nILSXTAGTVVxnhf----tqqEVTLNWXPldhvgaivFLGIXAVDl---A 241  Microcystis a...
3KXW_A        168 DIAFLQYTSGSTXhPKGVXVShh------nLLDNLNKIFTsfhx----ndeTIIFSWLPphhdxgliGCILTPIYg---G 234  Legionella pn...
2Y27_A         91 RISRIHASSGTTGkPTVVGYTaa------dIDTWANLVARsiraa-garrgDKVHVSYGyglftgglGAHYGAERa---G 160  Burkholderia ...
3WVN_A        194 DLAVLIYTSGSTAaPKAVACPhq------qIVFAASSINAvlgy----haeDIVFCRMSvswd-fglYKVLISTLt---G 259  Streptomyces ...
CAB60226      183 TIAKFLFTSGSTKlPKAVPTTqr------mLCANQQMLLQtfpvf--geepPVLVDWLPwnht-fggSHNIGIVLy--nG 251  Pseudomonas sp.
AAR91681      248 PLALLIYTSGSTGtPKGAMYTnrlaatmwqGNSMLQGNSQr---------vGINLNYMPmshi-agrISLFGVLAr---G 314  Nocardia iowe...
WP_011736943  167 ETAAILFTSGSTGpPKGAVYNhg------nFAAQVSALRQsygi----rpgEIDLPTFPl-------FALFAPAL----G 225  Pelobacter pr...
Q7ZYC4        280 QCCTLIYTSGTTGqPKGVMLShd------nITWTAAAAGKtvrlreatdlqEIVVSYLPlshiaaqmIDIWLTMKy---G 350  African clawe...
Feature 1                                               # ##  #                                   
1PG3_A        325 ATTLMFegvpnw---ptparmCQVVDKh---qVNILYTAPTAIRAlmaegdka--------------------------- 371  Salmonella en...
Q9Y2E4       1200 HQSILIppsele---tnpalwLLAVSQy---kVRDTFCSYSVMELctkglgsqte------------------------- 1248 human
4R0M_B        242 CDQIHVpxelvl---rqplqwLELIQKh---qVSISWSPNFAFSLinqqaeel--------------------------- 288  Microcystis a...
3KXW_A        235 IQAIXXspfsfl---qnplswLKHITKy---kATISGSPNFAYDYcvkriree--------------------------- 281  Legionella pn...
2Y27_A        161 LTVIPFgggq-------tekqVQLIQDf---rPDIIXVTPSYXLSiadeierq--------------------------- 203  Burkholderia ...
3WVN_A        260 AKLVLAggep-------dialVKSLREs---gATMMPIVPSLASMlttlirr---------------------------- 301  Streptomyces ...
CAB60226      252 GTYYLDdgkpt------aqgfAETLRNlseisPTAYLTVPKGWEElvgalerds-------------------------- 299  Pseudomonas sp.
AAR91681      315 GTAYFAaks----------dmSTLFEDiglvrPTEIFFVPRVCDMvfqryqseldrrsv--------------------- 363  Nocardia iowe...
WP_011736943  226 MTAVIPemdftrpgsvnpaiiISTIQQy---gATTMFGSPALIDRvsrygaq---------------------------- 274  Pelobacter pr...
Q7ZYC4        351 GATYFAqpdal------kgslAITLREv---rPTAFMGVPRVWEKmqekmkavgaksstikrkmatwakgvgletnlkkm 421  African clawe...
Feature 1                                            ##                                  ######   
1PG3_A        372 ---------------------iegtdrsSLRILGSVGep--------iNPEAWEWYwkkig---kekcPVVDTWWQTETg 419  Salmonella en...
Q9Y2E4       1249 ------------------slkargldlsRVRTCVVVAee-------rpRIALTQSFs-----------KLFKDLGLHPRa 1292 human
4R0M_B        289 --------------------khvsynlsSXKFLVNAGeq--------vSVKTIRLFleilekhqlqerAIKPAFGXTESc 340  Microcystis a...
3KXW_A        282 --------------------kkegldlsSWVTAFNGAep--------vREETXEHFyqafkefgfrkeAFYPCYGLAEAt 333  Legionella pn...
2Y27_A        204 ---------------------gldpvqsSLRIGIFGAep--------wTNDXRVAIeqr------xgiDAVDIYGLSEVx 248  Burkholderia ...
3WVN_A        302 ----------------------dpegapTLRMFTNSAaa--------lPQVTIDALrsaf-----pgaQVVRMYGQTECk 346  Streptomyces ...
CAB60226      300 --------------------tlrerffaRMKLFFFAAagl-----sqgIWDRLDRVaeqhc---geriRMMAGLGMTETa 351  Pseudomonas sp.
AAR91681      364 --------------agadldtldrevkaDLRQNYLGGrflvavvgsapLAAEMKTFmesv-----ldlPLHDGYGSTEA- 423  Nocardia iowe...
WP_011736943  275 ----------------------qgitlpSLRRVISAGap--------vPAAVMERFsdml----dpetEIFTPYGATEAl 320  Pelobacter pr...
Q7ZYC4        422 ngstphpmkyhvanklvfkkvrkalgldRCTKCYTGAap--------iTKDTLEFFlsl-------niPVYELYGMSESs 486  African clawe...
Feature 1                                                                                         
1PG3_A        420 g-fMITPLPgaie------------------------------lkagSATRPFf----gVQPALVdneghp--------- 455  Salmonella en...
Q9Y2E4       1293 v-sTSFGCRvnlaiclqgtsgpdpttvyvdmralrhdrvrlvergspHSLPLMesgkilPGVRIIianpetkg------p 1365 human
4R0M_B        341 s-gITWSAGlsknelt-------------------------eensfvSLGKPIp----gATIRIVdqennp--------- 381  Microcystis a...
3KXW_A        334 l-lVTGGTPgssyktltlakeqfqdh-----rvhfaddnspgsyklvSSGNPI------QEVKIIdpdtlip-------- 393  Legionella pn...
2Y27_A        249 gpgVASECVet-----------------------------------kDGPTIWed---hFYPEIIdpetgev-------- 282  Burkholderia ...
3WVN_A        347 --rISIMPPhleh------------------------------erpdSVGLPLp----gTTIEILdedgtl--------- 381  Streptomyces ...
CAB60226      352 pscTFTTGPlsm---------------------------------agYIGLPAp----gCEVKLVpvdgkl--------- 385  Pseudomonas sp.
AAR91681      424 ---GASVLLd------------------------------------nQIQRPPv-----LDYKLVdvpelgyf-----rt 454  Nocardia iowe...
WP_011736943  321 --pVCSIGSsevlaetrh---------------------lteqgrgvCVGLPVa----gIDLAIIpisdtpirhwgddla 373  Pelobacter pr...
Q7ZYC4        487 g-pHTISLPdaf--------------------------------ritSCGKVIs----gCKTKIHqpds----------- 518  African clawe...
Feature 1                                                            #                     #  #   
1PG3_A        456 qegateGNLVITdswpgqartlfgd-------herfeqtyfstfkNMYFSGDGARRde----------dGYYWITGRVDD 518  Salmonella en...
Q9Y2E4       1366 lgdshlGEIWVHsahnasgyftiygdeslqsdhfnsrlsfgdtqtIWARTGYLGFLrrteltdangerhDALYVVGALDE 1445 human
4R0M_B        382 lpereiGRLQIQgnsvtkgyynn------------nelnqevfqeGWFTTGDLGYLs-----------kGELFITGREKQ 438  Microcystis a...
3KXW_A        394 cdfdqvGEIWVQsnsvakgywnqpeet---rhafagkikddersaIYLRTGDLGFLh-----------eNELYVTGRIKD 459  Legionella pn...
2Y27_A        283 lpdgelGELVFTsltke------------------------alpiIRYRTRDLTRLlpgta----rtxrRXEKITGRSDD 334  Burkholderia ...
3WVN_A        382 lppgepGEITVTgphvmagywrapei------tarayrrdettgaMRLHTGDYGHLde----------dGFLYFGGRRDD 445  Streptomyces ...
CAB60226      386 -egrfhGPHVMSgywrapeq-----------------naqafdeeGYYCSGDAIKLadpa------dpqKGLMFDGRIAE 441  Pseudomonas sp.
AAR91681      455 drphprGELLLKaettipgyykr-----------pevtaeifdedGFYKTGDIVAEle----------hDRLVYVDRRNN 513  Nocardia iowe...
WP_011736943  374 lpdwevGEITVKgpqvtasylnrpe-------atslakipdpsggFWHRMGDLGYLdg----------eGRVWFCGRKAH 436  Pelobacter pr...
Q7ZYC4        519 ---dgsGEILFWgrhvfmgylnm-----------edkthesldeeGWLHSGDIGKHde----------nGFLYITGRIKE 574  African clawe...
Feature 1                ####                                                                     
1PG3_A        519 vl---nvSGHRLGTAEIESALVAHPk---iAEAAVVGIPhai----------------------kgQAIYAYVtlnhge- 569  Salmonella en...
Q9Y2E4       1446 am---elRGMRYHPIDIETSVIRAHks--vTECAVFTWT---------------------------NLLVVVVel----- 1488 human
4R0M_B        439 ei---iiNGVNYFAHELETTIEELEgv-kvSYTAAFAVFdqs---------------------retDLLIITFspeseq- 492  Microcystis a...
3KXW_A        460 li---iiYGKNHYPQDIEFSLXHSPlhhvlGKCAAFVIQee-----------------------heYKLTVXCevknrfx 513  Legionella pn...
2Y27_A        335 xx---ivRGVNVFPTQIEEQLLKQRal--aPHYQIVLTKeg-----------------------plDVLTLNVepcpet- 385  Burkholderia ...
3WVN_A        446 mf---krKGTRMSTVEIEAAALDIP-----GVTAAVALPpt-----------------------atRDLALCVas----- 489  Streptomyces ...
CAB60226      442 dfklssgVFVSVGPLRTRAVLEGGSy----VLDVVVAAPdreclgllvfprlldcralsglgkeasDAEVLASe------ 511  Pseudomonas sp.
AAR91681      514 vlk--lsQGEFVTVAHLEAVFASSPl---iRQIFIYGSSe-------------------------rSYLLAVIvptdd-- 561  Nocardia iowe...
WP_011736943  437 rv---itPMDTLYTIPVEGVFNSHPq---vKRSALVGLGkp-----------------------grQQPVLCVetetgvs 487  Pelobacter pr...
Q7ZYC4        575 lii--taGGENIPPVPTEDAVKEQVp---iISNAMLIGDkk------------------------kFLSMLLTlkcnvna 625  African clawe...
Feature 1                                                                          #              
1PG3_A        570 --------------------------------epspeLYAEVRNWVRKei-------------gpLATPDVLHWtd---- 600  Salmonella en...
Q9Y2E4       1489 -----------------------------------dgSEQEALDLVPLvtnvvl------eehylIVGVVVVVDig---- 1523 human
4R0M_B        493 -------------------------------feqgikVVRKIRSHVTQk---------------fGIAPAYVIPler--- 523  Microcystis a...
3KXW_A        514 ------------------------------ddvaqdnLFNEIFELVYEn---------------hQLEVHTIVLipl--- 545  Legionella pn...
2Y27_A        386 --------------------------------apdtaAIQVAKQALAYdik------------slIGVTAVINVlpv--- 418  Burkholderia ...
3WVN_A        490 -----------------------------------dlEPHDVLRSLAErl-------------epAKVPATCRIvn---- 517  Streptomyces ...
CAB60226      512 ------------------------------------pVRAWFADWLKRlnreatgnasrimwvglLDTPPSIDKgevtdk 555  Pseudomonas sp.
AAR91681      562 --------------------------------alrgrDTATLKSALAEsiqriak----danlqpYEIPRDFLIet---- 601  Nocardia iowe...
WP_011736943  488 -------------------------------qeehgrIRRELIALGSKyp--------------hTKSILKILFhps--- 519  Pelobacter pr...
Q7ZYC4        626 dtgepedeltpeaiqfcrqigskatlvsdivggkdtaVYAAIQEGVNSvnek---------stsnAQKVQKWLIlekdf- 695  African clawe...
Feature 1                          
1PG3_A        601 ------slPKTRSGKIM 611  Salmonella enterica
Q9Y2E4       1524 ------viPINSRGEKQ 1534 human
4R0M_B        524 -----nlvPKTSIGKVQ 535  Microcystis aeruginosa PCC 7806
3KXW_A        546 -----kaxPHTTSGKIR 557  Legionella pneumophila subsp. pneumophila str. Philadelphia 1
2Y27_A        419 ------ngIERSVGKAR 429  Burkholderia cenocepacia J2315
3WVN_A        518 ------dfPLTLNGKSE 528  Streptomyces halstedii
CAB60226      556 gsinqravLQWRSAKVD 572  Pseudomonas sp.
AAR91681      602 -------ePFTIANGLL 611  Nocardia iowensis
WP_011736943  520 -----fpvDIRHNAKIF 531  Pelobacter propionicus
Q7ZYC4        696 ---sitggELGPTMKLK 709  African clawed frog

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