Conserved Protein Domain Family
cupin_OxDC-like

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cd20306: cupin_OxDC-like 
Oxalate decarboxylase (OxDC)-like cupin domain
This subfamily contains bacterial and eukaryotic cupin domains of proteins homologous to oxalate decarboxylase (OxDC; EC 4.1.1.2) such as MSMEG_2254, a putative OxDC from Mycobacterium smegmatis. OxDC is a manganese-dependent bicupin that catalyzes the conversion of oxalate to formate and carbon dioxide, utilizing dioxygen as a cofactor. It is evolutionarily related to oxalate oxidase (OxOx or germin; EC 1.2.3.4) which, in contrast, converts oxalate and dioxygen to carbon dioxide and hydrogen peroxide. OxDC is classified as a bicupin because it contains two cupin folds with each domain containing one manganese binding site, with four manganese binding residues (three histidines and one glutamate) conserved as well as a number of hydrophobic residues.
Statistics
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PSSM-Id: 380440
Aligned: 73 rows
Threshold Bit Score: 145.812
Created: 3-Jul-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
metal binding
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H H [QE] HClick to see conserved feature residue pattern help
Evidence:
  • Comment:The four-coordinate metallocenter usually includes three histidines and one glutamate.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           # #    #                     
YP_886606    183 PHKFGVEAMTPPvtsavGSARTARVqf--wPALKDLSMYSLRVREdGMREPHWHPvTAEMGYVQsGSARMTVMDpdGTLD 260 Mycobacterium s...
PJD97010     181 TYKMRLEAAAPPiqnagGWVKMSNGfy--fPALQNIAVYSLVLAKkGAREPHWHPnADELNCLIkGTARITLLSpdGSVD 258 Parachlamydia sp.
PWU79810       7 IHKLNLEGVPPQiqtagGTVALGNItn--fPILNGLACYSLILKPnGVREPPWHPnAAELDYVLgGRARMIILSpgCSVD 84  Thaumarchaeota ...
WP_098039078 178 PYRYAVEASKPLvinegGTARMARQnt--wPIAKNQALYSLTLTGqGMREPHWHPeTAELGYVAeGRGRMSIQSpsGQVD 255 Estrella lausan...
WP_097170908 179 RLKFRVEESAPHvsspaGSARTAQApa--wSVLDGLSMFSVRISEiGLREPHWHPeTAEMGYVLeGTGQMTVLDpdGSAD 256 Rhizobium sp. AN5
CDZ81387     176 QYAFDIHDPNLAnd--gGFAKMTNAfv--fKELQDLSMYYLILNKdGVREPHWHPnTHELNYLIsGNAKISILSpnGDFD 251 Chlamydia sp. '...
ALI34331     187 LHTLNLIDTTPQvqtpgGTAVLGSLpy--fPILKGLSVFLLDLKPkGIVEPHTHPnAGELNYVIeGKVRFTVYSpnKEIE 264 Thaumarchaeota ...
XP_007787602 201 PHKLDIEAQNPPidlpyGSAKLARAqfwpaLREVNLSMYSLRVAAsGMREAHWHPeTTEMGYVAsGQARMSILSpdGDVV 280 Endocarpon pusi...
PJD96142     175 NFKFNVANSSKPiltkgGYVQLGTKtn--lPVLDGLGILRFGLNQkGIVEPHWHTnAGELVYIVkGSTRITVLSpdGSID 252 Parachlamydia sp.
OUU92493     173 HLKFNIEGSDKVvdvrgGYLQDGMKgn--fPALQGGGILAFGVNPgGAVEPHWHPnSDEVVYMTkGRVRVMLMSpdGTIE 250 Planctomycetes ...
Feature 1                         #                                                              
YP_886606    261 TWELQrGDVYFIPraYPHHIEVVha-pDLHFLIFFDQPtpa----dvGYRTSVSAysREVLAATFdth---iddLPDFPL 332 Mycobacterium s...
PJD97010     259 TFDMKpGDISFMPrgYLHHIENTgs-eDVHFAIFFSHKfps----dlGLSGVLGAysNNLLAALFnvpvafldqLPKHQR 333 Parachlamydia sp.
PWU79810      85 TFEVGpGEVVFIPpaFFHYIEKPdsvnNMHMAIFFGNAspq----niDISGGLSAnsHEVLSATFdlpptyfskLPRFER 160 Thaumarchaeota ...
WP_098039078 256 TYVMEkGDIYFIPkaYPHHIENLes-tPLHLLIFFDQGmpr----diGFTASVRAysDEVLASVLdt------sPDLFEK 324 Estrella lausan...
WP_097170908 257 TYSIHpGDAYFVPpaYPHHIENAgs-gTLHILIFFSRSapq----diGYRAAAAGysRNVIASQLgls---eqaLLPLPV 328 Rhizobium sp. AN5
CDZ81387     252 EFDMEeGDISFLPqgYIHHIENTgi-qPAEFAVFFNTNnpg----diGLSAALTTfsPEMLAQLFkm------dLSTLKT 320 Chlamydia sp. '...
ALI34331     265 TSEIGkGQVFFVPagYFHYLENSddvnNGTVASFFGNEnpe----fiGLVGGLSSfsDEALVAVFntdqkffsnLPRLVK 340 Thaumarchaeota ...
XP_007787602 281 TYYLQqGDCYVVPvaYPHQIEDLge-gGFNFLVFFDQAtpedigyrkTGSAFSRVm-PAVLGVEPg-------aEPAFPS 351 Endocarpon pusi...
PJD96142     253 KLEVKgGQGAFAPasYFHNIENIgn-dEVEVIAFFSHAspd----yiGIGEVIGSysNEVLGSIFnv------aPAYFDK 321 Parachlamydia sp.
OUU92493     251 RAEAGpGEGFYAPtsYFHSIEQIgs-eAAEGIAFFNNAdmv---ymgLGEAVGAFs-DDVLASTFasea-stfkACDKPG 324 Planctomycetes ...

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