Conserved Protein Domain Family
EEP-2

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cd09084: EEP-2 
Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2
This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.
Statistics
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PSSM-Id: 197318
Aligned: 48 rows
Threshold Bit Score: 178.259
Created: 7-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative catalytic site [active site]
Evidence:
  • Comment:based on other EEP superfamily members with structure; highly conserved in the EEP superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                  #                                        
YP_001192564  57 VMSYNVRLFnvfkwldrddipeNIKGFIDEKDPDILCIQEYsnsa------------hldlKVYPHryifidgkqiktGQ 124 Flavobacterium ...
ZP_03129038  134 AVTFNFGESnr----------pQFMSFLDAVKPDIILIQDAkgrg------------adlgRKIPGmyfs-----dldQF 186 Chthoniobacter ...
YP_001615340  94 VASFNTGSRamn--------idRLKGFVAETRPDVLALQECsase------------pelnAAFPGwsvh-----vdtGM 148 Sorangium cellu...
YP_461515    100 VMTWNIKYDrrk--------aaRFIREIDRCKPDVLLFQDAwnsmr-----------gplgKHMPPdwhv----ltrgQY 156 Syntrophus acid...
NP_296014    100 VLTYNVARGsqg-------taaALLSTLQASDADLILLQETnlldpakg-----lalrsglSGYALtq--------grEV 159 Deinococcus rad...
YP_001275025 114 VMTFNINGGner--------tdRVLAAIRAAQPDIIALQELnpsiaaa-------lerdlkNEYPYqlldp--qwgvtGM 176 Roseiflexus sp....
YP_003652383  94 VFAWNTNYWdmsd------dkdAFYAFLRHQDADVYLLQEYlywdgdrpv--riddsarlrAEFPGyrvl-----vqgEL 160 Thermobispora b...
YP_003096979  97 IVTMNIKGGgyg--------reAIYEYLNTSGADVVLAQEHmge--------------lsvPGYSHrtd------tyeLT 148 Flavobacteriace...
ZP_04607664  167 VFSWNTEYWydga------dpqHFHDYLAAQRADVYLLQEYvgwdlaghrpvpvdhvaelrRHFPDyqvv-----avgEL 235 Micromonospora ...
BAB79294     115 VVSWDTQHWcqst------dpePFYAFLRGLDADVYLLQEYhhdefdgtyr-lidderrlrETFPGhrav-----iarGL 182 Streptomyces gr...
Feature 1                                                                        #               
YP_001192564 125 AIFSKFPIi--dEGKIvfp-------------------ksdNNVVYADIkr---gKDIIRVYNMHLqsikispdvseisd 180 Flavobacterium ...
ZP_03129038  187 AFLSKFPIq--kAELVggak-----------------ihgePVAARYEIqy---qGRTIAIYSVHLptprqqlsrf---- 240 Chthoniobacter ...
YP_001615340 149 CLVSRHPLl--kAESRdrrdvwdkgghg--ailryeialpdALRPSSEEpr---gTRVFSLLNLHLetpre--------- 212 Sorangium cellu...
YP_461515    157 VIASRYPLs--eAEVHelpfs----------------gkrkESFLRCRMtv---gSTAISLYNVHFktprnsfytlska- 214 Syntrophus acid...
NP_296014    160 WTLSRWPVlrqtQHAVp-----------------------gSTRTFAETwvkgpdGRTLRVVNAHLgtvlitsa------ 210 Deinococcus rad...
YP_001275025 177 GIISRFPLrp-lAARLpgdr-----------------wigaPQAVEIDTp-----GQTITLLNFHAippvg--------- 224 Roseiflexus sp....
YP_003652383 161 LTLTRLPVva-aDHAVpetgad--------------wywkgGKAQRTDIrv---gGRTVSFYNVHLpvpfrigdd----- 217 Thermobispora b...
YP_003096979 149 ALNSKTEIl--hQEKIkts--------------------enGEAFFADIri---nGKTIRFVNIYLnpfsfdkskvkpse 203 Flavobacteriace...
ZP_04607664  236 LTMSRYPIv--aSRALdgmpyladptrhgvpadsdfadyyrHKVLRTDLrv---dGQVLSVYNVHVpvqldismd----- 305 Micromonospora ...
BAB79294     183 ITLSRLPV----VATVet---------------------aaRRTLRVDLemp-gdGRILATFNVHIpvqlrlisp----- 231 Streptomyces gr...
Feature 1                                                                   # #                  
YP_001192564 181 didnvnqkksqriyarISKGFTQQQEQAEIFKEhikk-------------ckyPIIICGDMNnsPFSYVYRnik------ 241 Flavobacterium ...
ZP_03129038  241 -------lggrhilgdLAGHGHREAGYGDFRDWvrermslagalakvlaeekePMIVGGDFNtpDHGYIYHifa------ 307 Chthoniobacter ...
YP_001615340 213 ------------aieaLIHGLWKQEAEHDRVIAlrawesela--rqwvdeapyPVVVAGDFNmpVDSAIYRrfw------ 272 Sorangium cellu...
YP_461515    215 ---ksrpwdlpefirsFDNNMKIRIAQAATIREylia-------------ergPVILSGDLNapDASLVCStlr-----g 273 Syntrophus acid...
NP_296014    211 ---------lrgdtakVRRTAQARREQVALLCRiaah-------------epgPVLLGGDLNtpPRGRLYRrlt-----g 263 Deinococcus rad...
YP_001275025 225 ------------pseyMTAAIGERERQAEAINAfvqa-------------qrtPVVVAGDMNatPFHRAYHile-----h 274 Roseiflexus sp....
YP_003652383 218 -------plsgrfyreLAERWAWRNGELSKLRAdlaa-------------nrnPVVVAGDFNs-AWMEVAPlgggtrlht 276 Thermobispora b...
YP_003096979 204 d-ydknkrklryilstLIPTFKAHQDEVSVIKKtiae-------------spyPVIVAGDFNavPNSYEYYqls------ 263 Flavobacteriace...
ZP_04607664  306 -------pteseftafMQAQQDRRQAHYRALRAdlas-------------nphGQLVAGDFNatSAMGELRela------ 359 Micromonospora ...
BAB79294     232 --------lradfyraVRTRAADREREYRGLLAdvag-------------cphPALIAGDFNttAAIGDARria------ 284 Streptomyces gr...
Feature 1                                             #                      ##       
YP_001192564 242 gkLKDAFEEAGEGFGATYKfk----------yyPARIDYIFTdtkmkvkQFESFPdfenSDHYPIMTRL 300 Flavobacterium johnsoniae ...
ZP_03129038  308 geMTDCFARVGRGWGLTFPgythnp--isffgpWLRIDYFFTgkgwrvtECRPEPgs-kSQHKAVFARF 373 Chthoniobacter flavus Elli...
YP_001615340 273 agFENAFSRAGLGFGATKRtr----------wfGVRIDHVLAgpgwtteRAWIGPdl-gSDHLPIVADL 330 Sorangium cellulosum 'So c...
YP_461515    274 agLRDAFAEGGRGYGHTYGhfllknrlpwlrfsWMRIDHIMSnaqlktrNCRVGTgk-aSDHRPVIADM 341 Syntrophus aciditrophicus SB
NP_296014    264 cfGPDAHDRAGQGPGWTFPg------------lLLRIDHLLVrdl-rptRARVLSma-gSDHRPLLVEY 318 Deinococcus radiodurans R1
YP_001275025 275 gaLSDVWRECGSGAGFTWPgnrtigg-vpvlpwFVRIDHLFTtngivclDASVGPwdgvSDHRAVVATL 342 Roseiflexus sp. RS-1
YP_003652383 277 paGSVLPVASWPVSEYPFPr-------------VWRLDWLFTspgltvsGYRFTGgapySDHQAQEFRI 332 Thermobispora bispora DSM ...
YP_003096979 264 enLKDVFVETGNGNSTSFHdy----------kiPIRIDYVFCseeitpvRYTVDRrakmSDHYPIIAEF 322 Flavobacteriaceae bacteriu...
ZP_04607664  360 trLTDAAVAGDQLYPVSWPds----------aaWWRLDWAFFtgpvrchEYRMVGsqghSDHLGQQVTV 418 Micromonospora sp. ATCC 39149
BAB79294     285 rlGSDAVALSGRLCPTSWQarp--------glrWWRLDWVLTtpgarvhRYRFRDprglSDHSVQEVSV 345 Streptomyces griseus

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