Conserved Protein Domain Family
FliA_WhiG

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TIGR02479: FliA_WhiG 
RNA polymerase sigma factor, FliA/WhiG family
Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.
Statistics
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PSSM-Id: 274153
Aligned: 20 rows
Threshold Bit Score: 234.475
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P17211        50 LILHYSPLVKYVAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDVDREIKFETYAITRIRGAMIDELRALDWIPRSVRQ 129 Streptomyces co...
CAE10670      21 LAVSYLPAVKAMAYRLKERLPSSIDTADLVSIGAEELIKLSRRYNEALNDSFWGFAKTRVQGAMLDYLRSLDVVSRGNRK 100 Wolinella succi...
AAS97699      39 IVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYAESRIRGAMLDELRRLDWFPRSLRQ 118 Desulfovibrio v...
tigr:BMA2843  14 VLTQYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAASRYKEDQGAQFETYATQRIRGAMLDELRSNDWLPRSLRK 93  Burkholderia ma...
AAF32414      20 FIERYSVLVKRIAHHLLGRLPPSVQVEDLIQAGMIGLIEAQQNYDGSKGASFETYAGIRIRGAMLDDMRKGDWVPRSVHK 99  Vibrio parahaem...
AAD19735      25 LIKTHLQLVRKIAWHVHGRVSSAIEVEDLIQIGMVALIEAANAFE-NRGFAFATYASMRIRGAMIDYMRQHAATARSSIA 103 Zymomonas mobil...
CAG18502      31 LVNKHASLVKRVVRHLTAQVTTVMSLEDMEQIGLMALLDVIRRYSDENDASLERLAVQRIRGAILDELRRMDWRSRRSRQ 110 Photobacterium ...
Q03474        28 LLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRLDWRSRKTRQ 107 Vibrio parahaem...
AAQ60659      18 HLAVYAPLVKRAARQLSSQAGGVFDREDMEQIGLMALLDCLRRYGGEPDERFAGFAMLRIRGAILDELRRLDWRPRSVRQ 97  Chromobacterium...
AAN04223      22 ILTRYLPLVKRAASHLRSQVSACFDQEDMEQVGMMGLLEAWRRYDSEPDPQFESYAFKRIRGAMLDELRRLDWRPRQLRQ 101 Aeromonas salmo...
P17211       130 KARNVERAYATLEARLRRTPSESEVAVEMGIAVEDLHAVFsqLSLANVVALEELLHAGGEGggrlslmdtledtaADNPV 209 Streptomyces co...
CAE10670     101 LIKQIDVEISHYMNEHSSEPSDEYLAEVLGEDIKKIREAK--IASDIYVLMPIEDQLSALH--------------EEATE 164 Wolinella succi...
AAS97699     119 RVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVRLGLeaLQNQLCLSLEAMQDSLAGEggp---------qsDADPM 189 Desulfovibrio v...
tigr:BMA2843  94 TSREVEHAVHQVEQRLGRSANETEIAAHLQMPLDEYQSMLqdLHGSQLVYYEDFDRSADDEpfldr----yradhS-DPL 168 Burkholderia ma...
AAF32414     100 NNREINQAVAELEGVLNRDPTDSEVAAHLGMSLDQYHSALtdINCSRLVGIEDLGVSDDVIspad------etddS-NPF 172 Vibrio parahaem...
AAD19735     104 RQKTLNKAREELSATLGRRPEDAEIAEKLNMSPSEYREWAdgAINIRQESLDDVYSDHSSift----------ddNADQA 173 Zymomonas mobil...
CAG18502     111 KSHELRDTERALGRQLGRMPTDQEVAAELDIELGDVKQRRvdTQAESLTSMDALQEDG-EQffg-----------lsFQC 178 Photobacterium ...
Q03474       108 QAHELNDVTRDLTRSLGRMPTDSEIIKALGTDEQDYYNRQnaALAGEMQSLDQLMENSTDShf-------------ggQY 174 Vibrio parahaem...
AAQ60659      98 EAHRVRDGLRELRRKLRREPTEAEALGLLGLDADAYRDALlaENAEAMASFDELVASGMELaa---------------eg 162 Chromobacterium...
AAN04223     102 QVHSHNQAQRELYNRLGRAPTEQELAVSLNCTVEEVRQLAyaSQAEALQSLEEWLENGGKApa----------------- 164 Aeromonas salmo...
P17211       210 EVAEDRELRRLLARAINTLPEREKTVVTLYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLA 276 Streptomyces coelicolor A3(2)
CAE10670     165 GRIEQEELVGIISEILESLSEREQLIIQLYYFEELNLKEISEVLEITESRISQIHKEVIKKIRERLG 231 Wolinella succinogenes
AAS97699     190 QTAATQELIERVASLIDELTPREKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLRREFR 256 Desulfovibrio vulgaris str. ...
tigr:BMA2843 169 SALLDEHLRSALVDAIERLPEREKLLMSLYYERGLNLREIGAVLEVSESRVCQLHSQAVARLRAKLR 235 Burkholderia mallei ATCC 23344
AAF32414     173 KGVADESFRKALVESIKQLPEREALVLSLYYDEELNLKEIGDVLGVSESRVSQILSQAMQRLRTKLS 239 Vibrio parahaemolyticus
AAD19735     174 SEMEREALQSALAEQIKTLPEREALVLQLYYVEELNLKEIGEVLDLGTARISQIKKSAVDHLRQKMT 240 Zymomonas mobilis subsp. mob...
CAG18502     179 NSYERVALKKAMAQALARLSKREQVMLSFYYEHEMNLKEIGLVFELTEARVSQIHKKALKSLNSMLT 245 Photobacterium profundum SS9
Q03474       175 DGMEHEHIRRSLDSALGRLSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQLNQLMS 241 Vibrio parahaemolyticus RIMD...
AAQ60659     163 TPEARLERQSELARALTALNEREQQVIQLYYEFELSLKEIAAVLELTEARICQINKSALKKMQACLM 229 Chromobacterium violaceum AT...
AAN04223     165 teSDDVDMAMTISKVLTSLDKREQLLLSLYYQQELNMKEIALVLGLTESRVCQLHKQCVLQLKQRLV 231 Aeromonas salmonicida
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