Conserved Protein Domain Family
Cas6_I-F

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cd09739: Cas6_I-F 
CRISPR/Cas system-associated RAMP superfamily protein Cas6f
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family
Statistics
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PSSM-Id: 187870
Aligned: 32 rows
Threshold Bit Score: 140.842
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5NPQ1         8 VDSYQDIYILPNqEIAPHIIMEKLFSLLHLELVRl----GSQHIGISFPEHDnn-------kpCLGSRLRLHG-TGADLH 75  Zymomonas mobilis
Q9CNW5         2 TTHYIELKAIPQmDMLQSEVIGHCMQILHQFLPH-----FEGRVGVAFPAYGlg--------rTLGGIVRLFA-NQEDCN 67  Pasteurella mul...
Q3J7J2         2 FSDYFEIQSIGQ-PEDTHFILSKLFTRIHGVLKS-----ESLNIGLGFPKLSq---------hSPGSIVRCFG-TPRELE 65  Nitrosococcus o...
Q87GC7         2 DWHYRTITFLPE-YRNNEAIAAKCIKELHRFNYKy----ETRSIGVSFPLWGq---------eTVGRKITFVStNKMELD 67  Vibrio parahaem...
Q1ZP94         3 ERYYVVIRYLVN-DIDLGLVAGRCVNILHGVLLSkk--nQYSGIGVSFPKWSn---------sSLGNEIAFVSyDRHALD 70  Photobacterium ...
Q1V9Z5         3 KRYYFCIRYTPV-QADYELLAGRCISQMHLFMVNnr--qAMNKIGVSFPDWSd---------vTVGQTIAFVAdDKEMMI 70  Vibrio alginoly...
YP_001341534   1 MKHYIDITLLPSdDIGVHFLWSKLMMQVHLALVEiqneqKQVPVAVSFPKYQpren---eklgFVGNKLRLFAnDKTDLE 77  Marinomonas sp....
YP_001555794   1 MNHYLDITLLPNeEVGHYFLWEKLYHQVHLALVEhknrvGQFEIAAAFPQFNem-------dnSLGSKLRLLAtQPQHLE 73  Shewanella balt...
ZP_00348267    4 LTHYIELKAIPQvDILQTDVIAHGLQILHKFLPL-----YQGQIGLSFPAYGlg--------rTLGGIIRVFG-NEQHCT 69  Actinobacillus ...
YP_001209099   1 MNFYQEITLLPDaEVSLYFLWSKVYGQLHIALADvrnryGIDTIGVNFPHYVyeeqnhkvvaaRLGDQLRIFAlAENDLE 80  Dichelobacter n...
Q5NPQ1        76 ELALSGWITRLDD--YLYCEDIKSVPEi--rQYCVVS--RVQAKSS---------PARLRRRairrhgfHDEEAKkv--- 137 Zymomonas mobilis
Q9CNW5        68 QLHQQLLRSGLSD--YALISEVSKTPLp--tEHRSYS--RVHRKGQs-------aIRRTEKRlks-qgrWDESIRa---- 129 Pasteurella mul...
Q3J7J2        66 QLQRNSGITHLEGrgMITIEPIAAVPSd--aNAIAYR--RDRSAEKdlagfrqrqMRRRVRRaeh--apNQPETNlr--- 136 Nitrosococcus o...
Q87GC7        68 FLISRRYFVQMTKlgYFSISTTQTVPDd--cSYVLFK--RAHSIDKgtf----agRARELKRle---rrALERGEifdp- 135 Vibrio parahaem...
Q1ZP94        71 YLTQQPYFEMMMNekIFLISNVNTVPK----ELPEVSfrRNQNIAKcft----geKRRRLQRak---rrAEERGEife-- 137 Photobacterium ...
Q1V9Z5        71 GLSFQPYYSLMVNegLFEVSSVCEVPD----NALEVRftRNQTIGKsfl----gaKKRRIKR-------SMARAElldag 135 Vibrio alginoly...
YP_001341534  78 RLNFGKWLHRLED--YVHIKSIADVPNdv-iSYESFN--RRSKSGSpd-----khIKRRMQRhn----eTWEQAAaffk- 142 Marinomonas sp....
YP_001555794  74 DLKVSNWLRHFTD--YLHISSIRPVPEki-eVYVAYS--RPAIRANka-----reIARRMKRhn----eTLEQATahfe- 138 Shewanella balt...
ZP_00348267   70 QIKTQLIGEGLQD--YVLITSVTPVPEei-vEYHRYQ--RVHRKGQs-------aIRRTEKFltq-qgkWTEDVRkem-- 134 Actinobacillus ...
YP_001209099  81 KLQINQWLERLSD--YVHIKRISKIEPnkvtGYVVVK--RYRYPSLdkv----alRFAQFRKi------NFEEARkhc-- 144 Dichelobacter n...
Q5NPQ1       138 ---ipDTAFErl------eLPF--IMTGSCSTKqprFPVFISHKii-qnKLMNGNFNSYGLSLg-----ASVPWF 195 Zymomonas mobilis
Q9CNW5       130 -----DMQQRqqn---vafFPH--CHLKSASTGq-rFILAVKENrm--pQSCVGVFNAYGLSNs-----ATVPHF 186 Pasteurella multocida
Q3J7J2       137 ----iEAKSRlqdnekaerPPY--LLLERDGRR---LPIHISTAsf-qiNTNICQFSSYGLARkvedkySAVPMF 201 Nitrosococcus oceani...
Q87GC7       136 -iaysKTTSHa-------fQSYhsLEEDSSSGNk--FRLNIQMKer-sgTVGTGKFSSYGLGNtdn-slQVVPLI 198 Vibrio parahaemolyticus
Q1ZP94       138 --pvkVHQSRe-------vELFhsVFMNSKKSGq-kFLLHIQRYps--pDIFIETYNSYGFSTnrs-hqGTVPDL 199 Photobacterium angus...
Q1V9Z5       136 tslpvTNEERv-------vDSFhrIPISSGSSGe-dYILFVQKEfv--cERGAANFNSYGLATnqe-rkGTVPEL 199 Vibrio alginolyticus...
YP_001341534 143 -gysmEKADKd--------LPF--IRMKSLHSDn-eFCMSIIRKea-apSNKHIMFNTYGLSAe-----GVLPKF 199 Marinomonas sp. MWYL1
YP_001555794 139 --gfkPKKTK---------APF--VYMQSYTKDs-rFPLFIQQThsavvKEGSVSFDSYGLSSr-----GYLPKF 194 Shewanella baltica O...
ZP_00348267  135 --lihQQNQKt--------FPH--VKLKSSSTKq-hFVLAIRQFrl--aEPASGLFNAYGLSQv-----ATVPHF 189 Actinobacillus pleur...
YP_001209099 145 --tkyKHQAKn--------YPF--IMLKSQSNQe-yYKLSIRQEna--qESVSGRFNVYGINSat--giVTVPNW 202 Dichelobacter nodosu...
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