Conserved Protein Domain Family
ABC_MutS-like

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cd03283: ABC_MutS-like 
ATP-binding cassette domain of MutS-like homolog
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Statistics
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PSSM-Id: 213250
Aligned: 11 rows
Threshold Bit Score: 256.072
Created: 27-May-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            ## ###                                   
NP_869172 522 AFQGLGHPllk----deaRITNDVTIGPtgtLLLVTGSNMSGKSTMLRSAGLNVALAMAGGPVCCRHMSLp-pVEMGTSI 596  Rhodopirellula ba...
YP_097831 175 MLCNFYHPqv------kdAVANDWEMENg-nICIFTGSNMAGKSTTLKAIASAVWLAHAGFPVPASSMVCpmfDGIFTSI 247  Bacteroides fragi...
O63852    664 EAANLRHPlveqlntqeeCIAHNISLEDk--GMLVFSVNGAGKSTLLRAIGVNVILAQAGMYVAADSFKLrpyNYLITRI 741  Sarcophyton glaucum
NP_349634 397 SGKEVGHPlig----eekRVNNDVDMNNk--IFVITGANMAGKTTFLRTVGINLVLAYAGAPVCASNLKCs-vVDIYTSM 469  Clostridium aceto...
NP_714416 409 SGKGLFHPlip----sdsRVSNPLDFIEeqnVVLITGSNMSGKTTYLRTIGVASILSMAGGPVPASKFSLp-vLKIHTSM 483  Leptospira interr...
AAW37000  329 VFSELTHPli------adAVANDFSLSQ---NILLTGSNASGKSTFMKSIAINIILASAIQTVTASKFVYq-pGIVFTSM 398  Staphylococcus au...
BAB80014  308 EIKNGIHPii------enPVANSINMSKr--GIVLTGTNMSGKSTFLRMLGVNMLFAQAFNFVLAEKYEGp-iFNIVTSI 378  Clostridium perfr...
NP_969697 404 QCKQVFHPlld----rnkAVANDFGFPHsksLGLLTGSNMSGKSTFLRTMGINQILSNMGAPVFADSYQTv-pMKVETCI 478  Bdellovibrio bact...
BAB81862  394 KGKNLSHPmlg-----ekGVGNSFDINKdkrVILITGSNMSGKSTFLRTVGFNCILAYLGLPVKGESFEAp-iLKVYTCM 467  Clostridium perfr...
BAC91944  401 AAGQLGHPlig----eavRVANDVTLGPpgtFLLVTGSNMSGKSTLLRSIGLNIVLALAGAPVCARSLRLp-pVTLKTSM 475  Gloeobacter viola...
NP_811609 399 QAEALGHPlmn----rnkCVRNGIDMEKrpfFIIITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEIf-pARLVTSL 473  Bacteroides theta...
Feature 1     #                                              ##                               
NP_869172 597 RVSDDLSQGVSYYMAELNRLSAVVTHarklaeqraagstnrIQFFLLDEILQGTNSRERQIAVARVLRFLvda-gaiGAI 675  Rhodopirellula ba...
YP_097831 248 NLPDSLRDGRSHFYAEVLRVKEVLEQink----------ghHCFVLFDELFRGTNARDAFEASVAVAEVLkakaysrFLI 317  Bacteroides fragi...
O63852    742 LGGDDLYRGQGTFEVEMRDLSTILQLan------------yNSLILGDEICHGTEVNSGTAILAATIERLina-qtsFVL 808  Sarcophyton glaucum
NP_349634 470 RITDDLNNGMSTFYVELMRVKKMIENvkk----------ktPMIFLIDEIFHGTNSNDRIAGAKKVLKILnen-wifGLI 538  Clostridium aceto...
NP_714416 484 RNEDNLEEGISFFYAEVRRLSEIVKKird---------knsSHLVLLDEILKGTNTRERSLACKGILKELkkn-rtiVFV 553  Leptospira interr...
AAW37000  399 ANADDVLSGDSYFMAELKSIKRIVEIpd-----------nqKIYCFIDEIFKGTNTTERIAASESVLSFLheksnfrVIA 467  Staphylococcus au...
BAB80014  379 SPNDDLSVGKSFYMAEAESILRIIRAldk----------elPVFCAIDEIFRGTNPIERISASAEILTYInnk-nsiSIV 447  Clostridium perfr...
NP_969697 479 EVSDSLRDGYSYFYAEVRRLRDILLTaat----------dtPVLYLIDEIFRGTNNRERQIGSRAVIQTLanektslGFI 548  Bdellovibrio bact...
BAB81862  468 RTGDNLEESISSFYAEILRIKIIVEGvkr----------geKILFLLDEIFKGTNSLDRHEGAEILINQLleg-ntlGLV 536  Clostridium perfr...
BAC91944  476 RVQDSLASGLSFYMAELQRLKEVVDAarp---------aerPLLYLLDEILLGTNSAERQVAVRRVLSFLlgr-galGAI 545  Gloeobacter viola...
NP_811609 474 RTSDSLTDNESYFFAELKRLKLIIDKlka----------geELFIILDEILKGTNSMDKQKGSFALIKQFmsm-danGII 542  Bacteroides theta...
Feature 1       #                                                           
NP_869172 676 TTHDLELAddpe-lmklAHTVHFRETItpdasgderMTFDYKMRDGVSPTTNALRLLEIVGL 736  Rhodopirellula baltica SH 1
YP_097831 318 STHIIELArkld-gddaCCFYYLESAIvd-----deLICNHKVKPGISESRVGYWIVKKELA 373  Bacteroides fragilis YCH46
O63852    809 STHLHQVCsli---dspVRYYHLSVIQqen----saLIYERKLKPGPGPSQYGIEVMGHIIN 863  Sarcophyton glaucum
NP_349634 539 STHDFELCelesdekrrIKNYHFSETYle-----dkIIFDYKLKDGPSDTTNAKYLMKMIGI 595  Clostridium acetobutylicum ATCC 824
NP_714416 554 TSHDLELAkv-----egVILKHFQEEVld-----gtMYFDYKIREGLVETSNALRILVQEGL 605  Leptospira interrogans serovar Lai ...
AAW37000  468 ATHDIELAell---kqrYENYHFNEVIen-----nnIHFDYKIKPGKANTRNAIELLKITSF 521  Staphylococcus aureus subsp. aureus...
BAB80014  448 ATHDRELVdil---kesYEFYYFSENVdsk----ngLSFDYKLKRGVSKTRNAIKLLEYIGY 502  Clostridium perfringens str. 13
NP_969697 549 STHDLELTvleq-sspsVMNLHFREDIdsa----gkMVFHYHLNQGPCPTTNALRIMAAEGI 605  Bdellovibrio bacteriovorus HD100
BAB81862  537 STHDFELCdmek-kdstIQNYNFREYYed-----nkLKFDYILRKGVSQTRNARYLMKMAGI 592  Clostridium perfringens str. 13
BAC91944  546 STHDLALAdlpe-laaaARTVHFREHFaaga-agpvMTFDYRMRPGVAPTTNALKLLELVGL 605  Gloeobacter violaceus PCC 7421
NP_811609 543 ATHDLLLGtlidafpqnIRNYCFEADItn-----neLTFSYQMRSGVAQNMNACFLMKKMGI 599  Bacteroides thetaiotaomicron VPI-5482

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