2OCC,1M56,1QLE


Conserved Protein Domain Family
Cyt_c_Oxidase_III

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cd01665: Cyt_c_Oxidase_III 
Click on image for an interactive view with Cn3D
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.
Statistics
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PSSM-Id: 238834
Aligned: 78 rows
Threshold Bit Score: 126.862
Created: 15-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:Subunit I/III interface [polypeptide binding site]
Evidence:
  • Structure:2OCC_C: interface with subunit 2OCC_A (subunit I), defined using 3.5 A contacts
  • Comment:Subunit III forms no interactions with subunit II.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   #  ##          #  
2OCC_C     18 LTGALSALLMTSGLTMWFHfn------sMTLLMIGLTTNMLTMYQWWRDVIRESTFQGhHTPAVQKGLRYGMILFIISEV 91  cow
BAA76312   15 VMMSFALSSLLVSMGNYLMmyes-gnpqSIMMMMSLISFSMVTMIWFRDSIRDSQVGL-YPISFVSNSMMFIGFVIFSEV 92  Dicyema misakiense
CAB55574   17 FFLGLILLFFFSTLMIFFKfa------lVLGLILGLLFLTVLLFLWSSSVLVEGLVGF-QVFFIEDSLKFGFFLFLFSEL 89  Globodera pallida
AAF20042    1 MIMGANLWGVAAMFICWVNei------sLDSLYWGIPLFVLTFYSWVRDIINEATFQGfHTEKVQSGLTLGFILFLISEL 74  Pacific oyster
AAK12902   13 MLTSMTILSACLSLIASMNytentpnssWLGLKLSTIMMIITLFYWGRDTMRDTTTGT-LTNNTSTNMKLAMILFLTTEA 91  Trichinella spiralis
AAK84279   30 ILISFALLSGALTLVNWLTlgem--ssnIVINSIILINLVSIIILWFRDVVREAKAGY-HTKKVQDGLMLGFLIFLITEV 106 Rhizophydium sp. 136
P24891     14 AYNLFFASAGMLSSLVMFFkf-----glYELFIFTLFSVLFISFAWGKDIAMEGLSGY-HNFFVMDGFKFGVILFVFSEF 87  nematode
CAD61194   18 LMFSFGVFGVDVGLVLFMClg------mYYPFFFCFLYLIYVSFLWVKDLLLEDVSGQ-YSFYDYRIFAQGFRLFLFSEL 90  dog heartworm nema...
BAD06240   17 LLTGMCVLMTVSGLIAMFHln------sPLLFFTSLLLLIGCVWRWAIDICDESSLGF-HTKPVQSNMITGFIIFILSEI 89  sea firefly
AAZ06458   16 FLLAWGLGLTAISFAHFLHgd------sIWYVVASLGGSVLCVYWWFVDIVTEATFLGkHTKRVQRGIRMGFCFFLVSES 89  sea scallop
Feature 1     #   ##     #                                                                    
2OCC_C     92 LFFTGFFWAFYHSSLAPTPelggcWPPTGIHPLNpLEVPLLNTSVLLASGVSITWAHHSLmegdrkHMLQALFITITLGV 171 cow
BAA76312   93 MVFLGVLWSFSWSMLIPSVwtgfeWPLVGMSFFDpFSLPLLGTSLLISSAVFVTWSHGSSsl---kGTMISLLFSILLGS 169 Dicyema misakiense
CAB55574   90 MLFFSFFWFFFDSVLVTSLdlgfwGVPLGVXKINpFGLPLLNSLLLLSSALILTNSHYFFla--ngFSSLTLLFSVFLGG 167 Globodera pallida
AAF20042   75 MLFFSFFWAFFHSALSSSVeigccWPPVGLECLDwSKVPLHNTALLVASSASITLSHNYLqwgdiwVATATYIATLGLSV 154 Pacific oyster
AAK12902   92 FFFITFFWMFLSSALIPEQg---tWPPTSLNMPSpLGVPSLNTILLITSSATVTMSHFQTslp-ngKPLNWLLLTLMLSI 167 Trichinella spiralis
AAK84279  107 LLFFSFFWCLGHSALNPTIei-vtWPPLGVNSINyLSLPLLNSVLLLSGGWIATWAHHSFflgnktNTLIGLIIAVILTI 185 Rhizophydium sp. 136
P24891     88 MFFFCIFCTFFDAALVPVHelgetWSPFGMHLVNpFGVPLLNTIILLSSGVTVTWAHHSLls--nkSCTNSMILTCLLAA 165 nematode
CAD61194   91 TLFFSIFRTFLDSALGPLTwlggvWSPLGILSPDyLGLNGTASLFLMMNSQFLKYSRRYLcln-scKCELFLLFCIFVGS 169 dog heartworm nema...
BAD06240   90 ALFASFFWAFFTSALVPTPeigltWPPQGIHIPSpSGAPLLGTLLLLSSGAFLTWSHHAMttgqdtDVTQGLIWCLILGE 169 sea firefly
AAZ06458   90 MFFVSFFWAFFHSALAPSVdigcyWPPMMATMKC-WGIPMINTSLLLGTIWPCGVAQKGMkaaelgDVLKGLGLTMVLGV 168 sea scallop
Feature 1                        ##  #   #                                                    
2OCC_C    172 YFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQlkfhftsnhHFGFEAGAWYWHFVDVVWLF 251 cow
BAA76312  170 SFVCIQFIEYLSSSFTISSSSFGSCFFVATGLHGLHVIIGLFFLAFSLFRLsr-----fhNAILDGPIWYWHFVDYVWLL 244 Dicyema misakiense
CAB55574  168 VFLGVQGFEYQNSSFSLSDSSYGSIFFLATGFHGFHVLFGLCFLIVSGVRNfiksfnfshHLGFEFAILYWHFVDVIWLF 247 Globodera pallida
AAF20042  155 MFIKNQYEEYAWSSFSISDGVYGSCFFMLTGLHGLHVIGGTCGLLFCFVRMmllqfssehHVALTLAIWYWHFVDIVWLG 234 Pacific oyster
AAK12902  168 MFITMQYVEYHTSTFTMSSGVNGSIFFMTTGLHGLHVLLGSMALTTCLLLMnqykysntsLNSYEMSIWYWHFVDAVWLM 247 Trichinella spiralis
AAK84279  186 IFVYVQYLEYSYSEFTIADSVYGSSFFILTGTHGIHVMAAVIFLCVATYRIftdsvtsehALNLDFALIYYHLVDVVWLV 265 Rhizophydium sp. 136
P24891    166 YFTGIQLMEYMEASFSIADGVFGSIFYLSTGFHGIHVLCGGLFLAFNFLRLlknhfnynhHLGLEFAILYWHFVDVVWLF 245 nematode
CAD61194  170 GFLCFQFYEYSDNCFGMNDSIYGSIFYVGTGLHGFHVLVGVFFLMVNFFRIklfnfnwyhIQAYDMSIDYWRFLEWMWGI 249 dog heartworm nema...
BAD06240  170 GFAVLQASEYACAQFSIADSALGSCFFMLTGLHGSHVLIGLSLLEICLVRHlkgqfatnhHLGFETSAWYWHFVDVVWLF 249 sea firefly
AAZ06458  169 CFVGLQVWEYYTATFTMADSVYGSCFFALTGLHGLHVVGGLIFIFVAWNRArlghfssarHLNLTFAIWYWHFVDMIWVF 248 sea scallop
Feature 1             
2OCC_C    252 LYVSIYWW 259 cow
BAA76312  245 VFTMGYLF 252 Dicyema misakiense
CAB55574  248 LFVFVYWW 255 Globodera pallida
AAF20042  235 LFFIIYIW 242 Pacific oyster
AAK12902  248 LYTTFYCW 255 Trichinella spiralis
AAK84279  266 VFLVVYFW 273 Rhizophydium sp. 136
P24891    246 LFVFVYWW 253 nematode
CAD61194  250 MFSLLYVW 257 dog heartworm nematode
BAD06240  250 VITFIYCW 257 sea firefly
AAZ06458  249 VYAIVYIW 256 sea scallop

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