Conserved Protein Domain Family
yebU

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PRK11933: yebU 
rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Statistics
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PSSM-Id: 183387
Aligned: 113 rows
Threshold Bit Score: 814.913
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
91793400    1 MLQINPNFIKHIEQELPSHLSMDEFILACNRPLRQSIRVNTLRISSEDFIALMTPRGWSFSPVPWCSDGFWITLT--HDE 78 
294141339   1 MALINQDFIDSITQDMPAHLSMDDFIQYSSRPLRASIRVNTLKISSANFIELMQPKGWTLESIPWCSDGFWISLD--SEV 78 
119775174   1 MVQLNQKFINSIAQEMPPHLSMDDFVHYCGLPLRLSIRVNTLKITSDALRAILEPRGWQFEPVPWCEDGFWVTVP----D 76 
170726339   1 MVQLNQDFINSIAKDMPAHLTMDDFISYSSKPLRPSIRINTLKISSDEFVTLMAAKGWTLDPIPWCSDGFWVALD--NEI 78 
157961750   1 MAHFNQNFLDSIERDLPSHLSMEDFIAYSNKPLRLSIRVNTLKISHDNFIDLMTPKGWHFEPIPWCKDGFWVTL----TQ 76 
157375779   1 MVQLNQDFIKSIAKDMPAHLSMDDFISYSSKPLRPSIRINTLKISSQDFIALMAPKGWTLEPIPWCQDGFWISLD--SDV 78 
167624296   1 MAHFNQNFLDSIERDLPSHLSMEDFIAYSNKPLRLSIRVNTLKISTENFIDLMSAKGWSFDPIPWCNQGFWVTIS----S 76 
127512512   1 MVQLNQNFINSIAKDMPDHLSMDEFISYCAKPLRPSIRVNTLKITTADFITMMNAKGWQFEPVPWCEDGFWVKVD--DSV 78 
212635616  74 MAHFNQNFINSIKQDLPSHLCMEDFISYSSKPLRPSIRVNTLKISSKNFIKLMTPKGWHFDPIPWCENGYWIKLD----Q 149
77360717   17 NTFIPEHFIDDVKTYLPAHLDIDDFINACRRPLRKSIRVNTLKISVTEFKQYAKQKNWLLTPIPWCEEGFWLERPaaEEQ 96 
91793400   79 --QLGNCLEHIQGLFYIQEASSMLPPTALFTnd------------daDERAPL--RVLDMASAPGSKTTQMAALMNNNGL 142
294141339  79 --QLGNTIEHLQGLFYIQEASSMLPPTALFSq--------------lNETANV--TILDMASAPGSKTTQLAALMNNSGL 140
119775174  77 dcQPGNLTEHYQGLFYIQEASSMMPPCALFM----------------DKEPRQ--LLLDVASAPGSKTTQLAALMHNQGL 138
170726339  79 --QLGNTIEHIQGLFYIQEASSMLPPTALFDg--------------lDNSSEY--TILDMASAPGSKTTQMASLMDNKGL 140
157961750  77 eiQLGNTIEHLQGLFYIQEASSMLPPTALFEplevavaaenteddgsDDFSNK--IVLDMASAPGSKTTQIAALMKNQGL 154
157375779  79 --QLGNTVEHLQGLFYIQEASSMLPPIALFSt--------------kTDKAEH--TILDMASAPGSKTTQIAAMMDNSGL 140
167624296  77 dlQLGNTIEHLQGLFYIQEASSMLPPTALFDshad---------nenDLSQFAqtRVLDMASAPGSKTTQIAALMNNQGL 147
127512512  79 --QLGNTVEHIQGLFYIQEASSMLPPKALFPep-------------iEDATSL--TLLDMASAPGSKTTQLAAMMNNQGL 141
212635616 150 evQLGNTIEHLQGLFYIQEASSMLPPTALLSv--------------eQHDAQQ--YVLDMASAPGSKTTQIAALMGNKGL 213
77360717   97 nlALGNTDLHLSGAMYVQEASSMLPPIALKQ----------------SIEHTN--YVLDMASAPGSKTSQLAALMNNQGV 158
91793400  143 LIANEYSASRVKVLHANVLRMGVSNCALTHFDGRVFGEYQYEAFDAVLLDAPCGGEGTVRKDQNALKEWQLDDVIAIADT 222
294141339 141 LIANEYSSSRVKVLHANVQRMGVTNTALTHFDARVFGEYLYDTFDAILLDAPCSGEGTIRKDPSALKNWSLKSSQAIVAT 220
119775174 139 IIANEYSASRTKALHANLQRMGVANVAITQFDGRVFGAHLYETLDAIQLDAPCSGEGTVRKDPLSLKNWCPDEIEAIAEL 218
170726339 141 LVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYLYHQFDAILLDAPCSGEGTIRKDPLALRNWSLEENASIIET 220
157961750 155 LIANEYSASRVKVLHANVARMGVANCALTHFDARVFGEYMFETFDSILLDAPCSGEGTIRKDPDALKNWDNNDDKGIVET 234
157375779 141 LIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYLYDQFDAILLDAPCSGEGTIRKDPLALNNWGLAENSAIAET 220
167624296 148 LVANEYSASRVKVLHANVARMGVSNCALTHFDARVFGEYLFETFDSVLLDAPCSGEGTIRKDPDALKNWDNNDNKGIVDT 227
127512512 142 LVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKYLFESFDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASV 221
212635616 214 LVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFEIFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDT 293
77360717  159 LVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFECFDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQV 238
91793400  223 QKDLIEAAFLALKPGGALVYSTCTLSQLENQAICQHLLSRYPEAVAFESLATLFDGAAKACTEEGFLHVWPQIYDSEGFF 302
294141339 221 QKALIESAFLALKTGGTLVYSTCALSRFENQEVCQHLQAIYPDAVEFESLSDLFIDADKACTEEGFLHVWPQIYDSEGFF 300
119775174 219 QRDLIDSAFQALKPGGVLVYSTCTLNRRENEDVCHFLKERYGDAVVFESLNDLFKGADKALTEEGFLHIWPQIYDSEGFF 298
170726339 221 QKALIESAFLALKTGGSLVYSTCALSRSENQEVCEHLMSCFPQAVEFQSLSELFPDADKSCTSEGFLHVWPQIYDSEGFF 300
157961750 235 QKALIESAFLALKVGGSLVYSTCALSRQENQDVCHHLKSLYGDAVEFGSLATLFPQADKACTEEGFLHVWPQIYDSEGFF 314
157375779 221 QKALLESAFLALKTGGSLVYSTCALSKLENQDVCEHLRSTFPEAVEFESLATLFPDADKACTDEGFLHVWPQIYDSEGFF 300
167624296 228 QKALIESAFLALKVGGCLVYSTCALSRQENQDVCHHLKTAFGEAVEFAALTELFPDADKACTEEGFLHVWPQIYDSEGFF 307
127512512 222 QRDLIESAFLALKPGGSLVYSTCTLNRRENQDVCLHLKATYGDAVQFESLAGLFPGAEKASTSEGFLHVWPQIFDSEGFF 301
212635616 294 QKALIDSAFQSLKAGGELVYSTCALSRQENQNVCDYLKQRYPDAVEFINLSSLFPGADKSCTEEGFLHVWPQIYDSEGFF 373
77360717  239 QKDLIKSAFYALKPGGTLVYSTCTLTPLENQHVCDFLLSEFGDCIIPESLSDLFPGASKATTPEGYLHVWPQTFDSEGFF 318
91793400  303 VAKMRKTASVPRIKSQPKAQKNFPFSPAPEKQIAALQDYiQQSFALSLPPGAqVYLRDDEFWLFPAPFSDFIGTMRFQRI 382
294141339 301 VAKIRKTAAIDRQVPEPRKQKNFPFNQVSTKTDLELRAYfQDTFAIELPSQSlIMEREQEFWLFPQKINSLIGRMRFQRI 380
119775174 299 VARIRKTASVARNTDDPRFVSKFPFVAANRKELSALEEA-MLALGVSLPEDAvIVTRDGEFWLMPAPLDGLLTKMRFQRI 377
170726339 301 IAKVRKVADVERQKPLPKAQRNFPFTAANNKTKDELSHYfKHTFGISLPKDGlIMERDLEYWLFPAKMADFIGKMRFQRI 380
157961750 315 VAKIYKTSAVERQLPEPRKQKNFPFTLAKPKQVEELAQYfRDSFSISLPDNAqVMVRDLEFWLFPSPVIPLIGKMRYQRI 394
157375779 301 IAKITKTCDVERQKPEPKRQKNFPFTPISSKVELELRQYfKQTFDIDIPTDDmLMVRDLEYWLFPAGMKTLIGKMRFQRI 380
167624296 308 VAKIRKVSAVERTLPEPKMQKNFPFTAAKTKQIEELTAYfEDSFAITLPTDAeIMVRDLEFWLFPKAVMPLIGKMRFQRI 387
127512512 302 IAKLTKIAAVPRNSEEPRKQKNFPFTPIDKKSRQALCDYfDTSFGIKLDGQGiLMQRDDEFWLFPTNVDPLIGKIRFQRI 381
212635616 374 VAKIKKVSSIERVLPEPKKQKNFPFEKASAKKIAEIVEYlKTSFGIVLPSENgIYVRDAEVWLFPEDFHKLIGKMRFQRI 453
77360717  319 IAKFKK-QASSDNPNLKVKKGAFPFQQFESKKSAVFMQTlKQQFGLNTLPGI-LMQRDKELWLFPQEFEAVQNKIKYARL 396
91793400  383 GIKLADVLKKGFKIKHEAVIALGAklgtnannnsntnpnnnantnpnnnsNTNPRCIPLNQAQAEQFLMGRDIDTASFdg 462
294141339 381 GMKIADALKHGLKAQHQAILAFGA----------------------------GASMIELSQAQATEYLMGRDIPLEAGh- 431
119775174 378 GIRLAETQKHGIKVRHEAVMALPC-----------------------------NQMLSIEPEAAKQYLMGRDIALDNAg- 427
170726339 381 GLKLADGLKKGFKVRHEAIMALSD----------------------------KHNAIELNESQAIEYLMGRDIPLQDGg- 431
157961750 395 GIKLADALKKGYKVRHEAVLALSS-----------------------------PTRFELSDEQAKEFLMGRDISLLEKg- 444
157375779 381 GVKLADGLKKGFKARHEAIVALAE----------------------------KSTGYELSQAQAIQYLMGRDIPLVDGg- 431
167624296 388 GIKLADALKKGYKVRHEAILALSS-----------------------------PTRFELSDEQAKEFLMGRDISLVEKv- 437
127512512 382 GLKLADALKKGFKPRHEAVMALAD----------------------------RLRGIPLDEAQAIQYLMGRDIALTSKe- 432
212635616 454 GMKLADVLKKGFKVKHEAVLALTS-----------------------------PNTIELTDDEAQVFLMGRDITLSEKv- 503
77360717  397 GIQLGAIHNNGVRLAHEFATAFGK--------------------------QCKSNVLPLTDTQANDYFQGKDIRLADVs- 449
91793400  463 kldlTPKGEMMVSYHGAAIGVVKHLGHRLKNSLPRELVRDNLG 505
294141339 432 ----KPRGEVIVSYHNSPLGLAKHLGKRLKNSLPRELVRDKIV 470
119775174 428 ----KAQGEKILSLHGAPLGIAKHLGNKLKNSLPRDLCRDNVQ 466
170726339 432 ----KPQGEVILTYHHCALGVAKHLGKRLKNNLPRELVRDKVI 470
157961750 445 ----KPQGEVIVSYASNPLGVAKHLGNKLKNNLPRDLVKDKIA 483
157375779 432 ----KPQGELIVTYHGSALGVAKHLGSRLKNTLPRDLVRDKIA 470
167624296 438 ----KPQGEVIVSYASNPLGVAKHLGNKLKNNLPRDLVKDKIA 476
127512512 433 ----KPQGERLVSYQGAHLGLVKHLGNKLKNSLPRDLVRDKIC 471
212635616 504 ----KPQGETIVSYAGVSLGVVKHLGNKLKNNLPRDLVKDKIA 542
77360717  450 ----QNTGEVILTLCGCPIGLGKWQKNKVKNSLPRDLVQNTQL 488
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