Conserved Protein Domain Family
antiterm_UpxY
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NF033644: antiterm_UpxY 
UpxY family transcription antiterminator
The UpxY family of NusG-related transcription antiterminators was described originally from a paralogous family of eight members from Bacteriodes fragilis, UpaY to UphY, each of which was associated with a distinct capsular polysaccharide biosynthesis locus. There is no UpxY protein per se.
Links
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Statistics
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PSSM-Id: 468125
Aligned: 217 rows
Threshold Bit Score: 75.9701
Created: 11-Oct-2024
Updated: 3-Dec-2024
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_004312234  68 WYALR--TTYGREKKAYDYMTAKGITAFYPTTDTVKLIKGKRKIVTESRLPNIFFAYGTEEQLKSFVyDNVNLPflrFYY 145 Bacteroides ovatus
WP_007853027   3 WYVMRdlKRVNAKVPAYKLLEGMKMEVFVPMKWHLVTRKGIRIREEVPFIQDLLFVHETQNNLDAVVeKTPTLQy--RWL 80  Phocaeicola
WP_005639473   9 WYVMRdlKRCNAKKPAYKQLQEAGVKVFVPLKWQIILQKGKKVREKVPVIQDLLFVYDSRQHLDSIVeRTKTLQy--RWL 86  Parabacteroides...
WP_018665840  13 WFVMRdlKRRNAKQPAYLMFKDKGMEFFTPMVHKLLTIHGKREDREVPFMQDLLFVKETKEKLDIIVeAIPTLQy--RYK 90  Bacteroides gal...
WP_004292758  13 WYAMRdlKRRHAKLPAYKMFENLKVQCFTPMVHRLVVVGGKRVDQEVPFMQDLLFVKDTREHLDAIVeSTPKLQy--RYK 90  eubacteria
WP_008619085  14 WFVMRdlKRCNAKQPAYKLFKDLGMEVFTPMVWKLSVKHGKRCREEVPFIQDLLFVNGTRLAVDPIVeKYNTVQy--RYL 91  Paraprevotella ...
WP_007846707   8 WFVMRdlTRSNAKYPACQMLDDIKIRNFTPKVQKIIIRNGKRVRMEVPFIRDLLFVYDTREHLDPIVeKTPTLQy--RYQ 85  Phocaeicola dorei
WP_007561332   8 WFVMRdlTRSNAKIPAYQMLDDMGIENFTPKVTKIVTRNGKRERKELPFIHDLIFVHSSRTVIDPIVeRVHTFQy--RFL 85  Phocaeicola ple...
WP_008621488   7 WYVLRdlSRPNAKLSAFEKLTGRGVRCFTPMVKKPIERRGKHGWKDVPYIRDLLFAHSTRDVLDPFMrPGLKLQy--RYI 84  Paraprevotella ...
WP_009275830   9 WFVLRdlTRPNK-RPAYRLLEEKGIEIFTPMRWRLVERKGKRIREEVPLLHDLLFAHTTCACMDPIVeEISTLQy--RYL 85  unclassified Pa...

WP_004312234 146 RhVHVGRRiekipmiVPDYQMDSLKIICAADADNTIVSlvevPKFEKGQLVRVTDGAFKGVIGRVARWQG--QQRVGVVV 223 Bacteroides ovatus
WP_007853027  81 R--GTWREpm----tVADRDMERFIRAVDATESPRYYLpeeiTPTMYGRKIRIEGGPLSGYEGRLLTTRGskVKRLLVEL 154 Phocaeicola
WP_005639473  87 R--NTFREpm----tVSDLEMDRFIQAVSSSDSPQYYLpeeiTPQMCGRKIQIIGGSLNGYEGCLLKIRGskIKRLLVEL 160 Parabacteroides...
WP_018665840  91 L--GVQHTpi----vVRNTDMERFIKAVEATENPKYYRpeeiTPDMLNRKIRIIGGQLDGYTGTLVTTRGskTKRLLVEL 164 Bacteroides gal...
WP_004292758  91 L--GVQHTpi----iVPVADMERFIKAVEASDNPKFYSpdevTPEMRNRKIRIIGGQLDGYTGTLVTTRGskTKRLLVEL 164 eubacteria
WP_008619085  92 R--GGYKIpm----tVRETDMQRFIHAVESSENPCYYTpeeiSSDMIGRKVRIVGGPLDGYEGNLQKIQGahIKRLFVEL 165 Paraprevotella ...
WP_007846707  86 K-GKGYCNpm----iIPDNDMEKFIHAVESVEKPQYYLpdelTPAMYRRRIRIVGGNLDGYEGMLLTTRGsrVKRILVKI 160 Phocaeicola dorei
WP_007561332  86 K-GREpm-------iVRDKDMASFKQAVESSRFPQYYSpqdiTPCMFKRKIRIIGGRLDGCEGYLLTVRGskRKRLLVEL 157 Phocaeicola ple...
WP_008621488  85 Y--GGFMEpm----tVREADMERFILAVTSSVSSKYYRpeeiTPAMRNRRIRIIGGPLHGYEGSLVTVRGttVKRLLVEL 158 Paraprevotella ...
WP_009275830  86 R--GGYRKpm----tVGHAEMNRFIRAVHSDDSPRYFLveelTPAMYGRMIRIEGGPLDGYEGRLLSIRGsrVKRLIVEI 159 unclassified Pa...

WP_004312234 224 DDLVTVVTAYIPSAFI 239 Bacteroides ovatus
WP_007853027 155 EG-FLAVGVEVDPEYI 169 Phocaeicola
WP_005639473 161 KG-YLAVGVEVLPEYI 175 Parabacteroides merdae
WP_018665840 165 P-LLLAAAVDVETEFI 179 Bacteroides gallinarum
WP_004292758 165 PT-LLAASIEVEAEYI 179 eubacteria
WP_008619085 166 PS-LLAAAVEVQPEYI 180 Paraprevotella clara
WP_007846707 161 PT-WLAAAIEVNPEYI 175 Phocaeicola dorei
WP_007561332 158 P-MLITAAVEVEPEYI 172 Phocaeicola plebeius
WP_008621488 159 P-MLLAAAVEVEPEFI 173 Paraprevotella clara
WP_009275830 160 PG-LLVAAVEVDPVYI 174 unclassified Parabacteroides
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