Conserved Protein Domain Family
KOW_Spt5_6

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cd06086: KOW_Spt5_6 
KOW domain of Spt5, repeat 6
Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.
Statistics
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PSSM-Id: 240510
Aligned: 39 rows
Threshold Bit Score: 70.2378
Created: 27-Mar-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2065177      1028 EHLEPITPTKNNKVKVILGEDREATGVLLSIDGe-DGIVRMDldEQLKILNLRFLGKLL 1085 human
XP_971098     992 DHLEPVRPQRGDAFKVIIGEEREATGELLSIDLh-EGVVKMK--NDIKMLPLQNLCKMR 1047 red flour beetle
XP_001844481  988 NLEPVVPTVAGDRFKVIFGDERETLGEFLSLSSnkEAIVSIN--GKKKLLPLNYLCKVK 1044 southern house mosquito
XP_001231045 1029 SNLQPVLPEPGEKFKVIVGEDRETVGEFIDMSGsnEAVVMIN--GQSTLIPMNYMARYR 1085 Anopheles gambiae str. PEST
EFN89194      993 EQLEPVVPSRGDRVKVILGEDREAVGTLLSIDNq-EGVVKLNt-EEIKFLQLRFLCKMK 1049 Harpegnathos saltator
XP_002435268  903 EHLEPVVPVAKDKVKVILGEDREETGELLSIDHp-EGVVKMGn-GKITMQPMRYLCKMH 959  black-legged tick
EFX65744     1041 ELLEPIVPSRRDRVKIILGEERESCGQLLSIDHq-EGVVKLEs-GDVRMFQLRYLCKMT 1097 common water flea
EKC29617      989 EHLEPVSPEKGDRAKVILGEERELMGTLLSIDGt-EGVIKTDs-GHIRMLPINYLCKAG 1045 Pacific oyster
EGD79485     1029 EDLTPIDPVKNDRVYVMEGDQQGMRGMLVSIDGv-EGVVKFFdpPSLKIIPMAQLTRCA 1086 Salpingoeca sp. ATCC50818
XP_001951771 1009 DNLEPIMPKPSDYVKVLCGSYRDRTGNMMAIEGs-EGVVVMPdeKNPILIPLLHLCRAN 1066 pea aphid
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