Conserved Protein Domain Family
SLC5sbd_PutP

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cd11475: SLC5sbd_PutP 
Na(+)/proline cotransporter PutP and related proteins; solute binding domain.
Escherichia coli PutP catalyzes the Na+-coupled uptake of proline with a stoichiometry of 1:1. The putP gene is part of the put operon; this operon in addition encodes a proline dehydrogenase, allowing the use of proline as a source of nitrogen and/or carbon. This subfamily also includes the Bacillus subtilis Na+/proline cotransporter (OpuE) which has an osmoprotective instead of catabolic role. Expression of the opuE gene is under osmotic control and different sigma factors contribute to its regulation; it is also a putative CcpA-activated gene. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.
Statistics
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PSSM-Id: 271369
Aligned: 120 rows
Threshold Bit Score: 302.121
Created: 15-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Na binding site
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    #  #                             
NP_753079   8 LVTFCVYIFGMILIGFIAw--RSTKNFDDYILGGRsLGPFVTALSAGASDMSGWLLMGLPGAVFLSGIsesWIAIGLTLG 85  Escherichia coli C...
ADY60896    7 LASFIGFLLLITAIGVFAsmvQHQKSTEDYLVAGRsVPAWLSALSAVATNNSGFMFIGLIGYTYRYGYeaiWMMIGWIVG 86  Planctomyces brasi...
EDX76443    3 AATFIVFLLVFTGVGIYSt-tQKQNTTTDYLLASRnVNPWLTALSAMATGQSGLLFIGQVGFAYTIGLsaiWLTLGWMIG 81  Microcoleus chthon...
EAW34086    8 AICFIVFLLLFAGVGIYSa-tQKQDNTRDYLLAGRnVNPWLTGLSAFATAHSGGMFISMIGFTYQAGIssaWLLLGWLLG 86  Lyngbya sp. PCC 8106
CAL17590    5 AISFLCVLALFLIIGISSi-rKKHEDVNDYLTAGYnTPAWIIGLSSVATNNSGYMFIGLVGYTWVAGVsafWVALGWLVG 83  Alcanivorax borkum...
EDM74523    7 VASFVVFLLAFVAIGALSa-rASRASTEDYLVASRdVKPWLIALSAVASNNSGYMFIGLIGFTWRVGIsaiWLQIGWVMG 85  Plesiocystis pacif...
YP_760353   4 AISFVLILLSFVVIGLASg-rKATGKRKDYYLASSsVSPWLAGLSAVATNNSGYMFIGVIGFTYQTGLaamWLMIGWIVG 82  Hyphomonas neptuni...
EDM82370    2 GASFFICLALVLLIGLSSa-rQAKASAADYFVASRsVPPWLVGLSAVATNNSGYMFIGLIGYTYAVGIqsvWLMVGWIAG 80  Limnobacter sp. ME...
ABD80456    3 LASFIAFLLMFACIGLASa-rVSKGSVGDYYLASRsVKAWLVGLSAVATNNSGYMFIGVIGYTYVEGLasvWLMTGWLVG 81  Saccharophagus deg...
ACE83551    2 AISFFICLMFFLVIGLSSa-rVRKNTQQDYYLASHsVSPWLAGLSAVTTNNSGYMFIGVIGYTYAVGLsasVLMVGWILG 80  Cellvibrio japonic...
Feature 1                                                                                     
NP_753079  86 AWINWKLVAGRLRVHTeyn-nnALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETAL 164 Escherichia coli C...
ADY60896   87 DFLAWQFVHPRLRLESgkieatTVPMLIGSRRNKPGTNRILVIVTGLLTFVFLGAYAAAQLKAGSTALQTLFGWNPEAGA 166 Planctomyces brasi...
EDX76443   82 DYIAWWFVFKRFRQVSee---iSADTVSSFLGQETKGIRWITAISALITIAFLGSYAAAQLVAGGKALHAVFNWNYSLGV 158 Microcoleus chthon...
EAW34086   87 DYLAWFIVHKPLREVSee---nDSETIGSFLNNNPKGNQSIAVVSAVITILFLGAYAAAQLIAGGKALYAVFGWDYSLGI 163 Lyngbya sp. PCC 8106
CAL17590   84 DWFVWRGFHRRLREYSet--hpVNTIPALTSQNPELASSPLRILSALLTLIFLSVYAAAQLKAGSKALHVMFDWPIWLGA 161 Alcanivorax borkum...
EDM74523   86 DLLSSLWLHRRVRVHServ-gaTSVPGLLARDGRGQSSRTIAALAGALTLVFLSTYAAAQLLAGSTTLHTLFGWPMWTGS 164 Plesiocystis pacif...
YP_760353  83 DFIGSSFIHKRLRQATak--tgEASFAGVIARWYGEKFGIWQKIAGVIMIVFLIAYAAAQISAGGKALEGVLGINPWTGA 160 Hyphomonas neptuni...
EDM82370   81 DLIGSKVAHERMRDEAer--vhANGIISLLARWGDTRNRSWQILAALVSVAFLCTYAAAQISAGGKALEGMLDIPMAIGM 158 Limnobacter sp. ME...
ABD80456   82 DFVGSTFAHNRLRGAAka--ngDVSYISVLNNWNGQGAPYLQRLMGLLALTFLLAYASAQLVAGSKALFVLLDWPTYLGA 159 Saccharophagus deg...
ACE83551   81 DLLASLWVHKKLRAVSve--qgESSYIATLGAWGGLRQSWFRPLAAAIVLVFLLAYAGAQLVASSKALQVLLDWPTWLSA 158 Cellvibrio japonic...
Feature 1                                                                                     
NP_753079 165 WAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISvggfgdslevikqkSIENVDMLKgl--------nFV 236 Escherichia coli C...
ADY60896  167 IIGTFIVIIYCYAGGIRASIWTDAAQSGVMIVSMILLLGTAVYQiggpaglsaalasqDPSLVNWLPadlk----fgfLP 242 Planctomyces brasi...
EDX76443  159 IVGAIVVMIYCFSGGIRASIWTDAVQATIMIGSLVLLVVVAIANcgglagfwtqldaiDPELVSLSPkdle----wgfVP 234 Microcoleus chthon...
EAW34086  164 IVGAIIVVLYCFSGGIRASIWTDAVQSVVMMFSMIMLLVISIAAcggmgelwskleqiDPTLISLVPpnlq----fgfGL 239 Lyngbya sp. PCC 8106
CAL17590  162 VLGAVVVVLYSFAGGLRASIWTDVAQSFVMLFGMVLLCIVAMINvgfpwtlvdelrniNPALLDWTPdnla----fgtGA 237 Alcanivorax borkum...
EDM74523  165 VLGVVIVAIYCLAGGIRASIWTDAAQSLVMIVAMLVLLAMCMAEagspatlmttlataDPALADPAPdgls----lglGL 240 Plesiocystis pacif...
YP_760353 161 VMVAAMVLLYSIVGGIRASIWTDGAQSITMMFAMTILLIAAFAGvggvsga-lelwsaIPGFLDPFPddllfpgalgmGL 239 Hyphomonas neptuni...
EDM82370  159 GMVALVVIAYSIAGGMRASIWTDAVQSLLMVVSMVVLLIAAVNHlgglqav-fqqagaIDGFLNPSPtnldvpgfigpLA 237 Limnobacter sp. ME...
ABD80456  160 TVGAVIIMGYCLAGGIRASIWTDAAQSFVMILAMSILLVVAVASvggvgda-iakmdaIPYYLSVMPqdlavpgwgglGL 238 Saccharophagus deg...
ACE83551  159 SLGALLVMLYCMAGGIRASIWTDAAQSLVMMLAMGIMLVSAFNAlggvepv-yqamsaIDGFLSLEAaavvlpgaagvMV 237 Cellvibrio japonic...
Feature 1                                                                                     
NP_753079 237 AIISLMGWGLGYFGQPHILARFMAADShhsivhARRISMTWMILCLAGAVAVGFFGIAYFNEhpavag----avnqnaER 312 Escherichia coli C...
ADY60896  243 YFLGMTAGGFGAVGQPHILVRFMAIESvekisrAKMIYFAWFIPFFLLGIGVGLYSRALLPDlmhlpltegmsasqasEF 322 Planctomyces brasi...
EDX76443  235 FLIGWIAAGFGVVGQPHILIRAMAINSankiglARDIKVICAFFTSSSAMAVGMAARVLLPDllin---------gdpEL 305 Microcoleus chthon...
EAW34086  240 FLLSWLCAGFGVVGQPHIMVRAMALDSpknmalTRNIYAVLYLIFSTATIGVALAARILIPDlitn---------gdpEL 310 Lyngbya sp. PCC 8106
CAL17590  238 FVLGWVAAGIGAIGQPHILVRTIALRSpddvpaARKVYFAWYLPFALLTVTISLYARVLLTGdls-----------dpEL 306 Alcanivorax borkum...
EDM74523  241 YLLGFLFGGAMTVAQPHILIRFMAIDRpesigrARAMYFGWYLLFSVAVILVGLYARALLPElgagleg--aeldaatER 318 Plesiocystis pacif...
YP_760353 240 FIVGWLFAGFSVVGQPHVMVRFMALDHdrnmgrARAWYYGYFTIFYLLATGVGMLSRLYLPDlad----------idpEL 309 Hyphomonas neptuni...
EDM82370  238 FVVGWMFAGAAALGQPHIVSRFLALQNtrqmnqVRWWYYSYYLLFYCFATAVGLLSRLYFGEstg----------fdpEM 307 Limnobacter sp. ME...
ABD80456  239 FVLGWFVAGLSVIGQPHIMVRFMALEDtrrynvARCWYYSWFTIFYCMATAVGMLARILLPDvda----------fdaEL 308 Saccharophagus deg...
ACE83551  238 FFIGWLVAGFAVIAQPHIMVRFMALSSaegfvrARLWYYLWFIVFYVMATGVGMLSRIYLTDaqh----------fdaEL 307 Cellvibrio japonic...
Feature 1                             #  ##                                                   
NP_753079 313 VFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYkaflrkqasqkELVWVGRVMVLVVALVaiaLAAN 392 Escherichia coli C...
ADY60896  323 AMPVLARELLPDVLLGLMLAGLFSATMSTADSQILVCSGSLTQDVFpq-------wkNSYAASKVATLLVAALalaIALS 395 Planctomyces brasi...
EDX76443  306 ALPYLALELLPPILVGMMLAGLFAATISTADSQILSCSAALTQDLFpg-------laHSYNYAKLGTLTVTVItlsIALA 378 Microcoleus chthon...
EAW34086  311 ALPQMAIQLLPAVWVGVILAGLFSAVVSTADSQILSCSAALSQDIFpq-------iaHSYKFAKLATLVVTFIiltIALG 383 Lyngbya sp. PCC 8106
CAL17590  307 TLPTMAQAYLPDVLAGMVLAAIFAATLSTADSMLLSCSAAISQDLIpr-------fgQSYVRTKIATLGITLVvlvVALA 379 Alcanivorax borkum...
EDM74523  319 ALPTLSLELLPSILVGVMLAGLFSATMSTADSQLLSCSAAITQDINpr-------waDSPRASKAATLGVAGLaltIALA 391 Plesiocystis pacif...
YP_760353 310 ALPMMATELLPPVLVGVILAGIFAATMSTADSLVLSCSASFTHDLApe-------rlETPLILKTATAVSILIalgLALS 382 Hyphomonas neptuni...
EDM82370  308 ALPNMARDLLPPWLAGLMLAGIFAATMSTADSLVLSCSSALTQDLPrn-------psENRWLLKAATGFTTLFalgIGLW 380 Limnobacter sp. ME...
ABD80456  309 ALPTLALKMLPTVLVGLILAGIFAATMSTADSLVLSCSSTLSHDIFpasdk--ftpkQKLIIAKLATVTIAVAalvWALT 386 Saccharophagus deg...
ACE83551  308 ALPSMAVELLPPLMVGLVLAGIFAATISTADSLLLSCSAFLSQDLLpr-------lfGRAYGMKVATLLATLAalaWALF 380 Cellvibrio japonic...
Feature 1                                                                                     
NP_753079 393 PENRVLgLVSYAWAGFGAAFGPVVLFSVMWSrmtrnGALAGMIIGALTVIVWKqfg--wlgLYEIIPGFIFGSIGIVVFS 470 Escherichia coli C...
ADY60896  396 ASDSVFaLVLVAWSAMGATLGPILILRLYGRrpntvVSLAMMAAGLTTVFVWNsvgl-dgaVFKLLPGFLAPVIVYIITI 474 Planctomyces brasi...
EDX76443  379 GDDNVFaLITFSWSVLASSLGPLLILRVWQKsvttpVAIAMMFGGIAAALFWKvgldlsgiVYEVLPGMAAGGLIYLGSQ 458 Microcoleus chthon...
EAW34086  384 SDKNMFaLGVFAWSALAAGLGPLLVLRAWKRpvnsgVGVAMMITGITVAAVWNgvlglsnsIYEVLPGMVAGFLVYGCSL 463 Lyngbya sp. PCC 8106
CAL17590  380 APANVFtLVVFAWSSLGGTLGPVIVLRVMNArltrtTALVMMLAGFTTLITWQalgy-sesLYELLPALVVSFGVYAVMR 458 Alcanivorax borkum...
EDM74523  392 NIDGVFaLVMIAWAALGATLGPLLMVRLRGRplppwLAAVMMASGLVTVIAWRatpw-vdaVYEALPGVLVPMLIYTIYT 470 Plesiocystis pacif...
YP_760353 383 GNQSVFsLVILAWSTLAAAFAPLLTLYALRRrvsepVAIMMLVLGVSIALFWRfglgwhesIYEGLPGILVPLIIGWFLS 462 Hyphomonas neptuni...
EDM82370  381 SEQSVFsLVVWAWGTLGAAFVPILIWQVLGAklnswAMLCMSSTGVLTTVAWKffgf-pntVYEGAVGMFCAFVLGAVFT 459 Limnobacter sp. ME...
ABD80456  387 NKQSVFgLVLMAWSTLGSAFAPLLIVLAFGAkplasTRAAMIASGVAACLLWRyfgl-qgaIFEGVAGISAALIIFLVHT 465 Saccharophagus deg...
ACE83551  381 NRQSVFaLVVLSWAMLAACFVPLILVLLLGSrprgwQAVLMMLTGCGAVLALHlagv-svdLFFGLPAILLALLVYWCAV 459 Cellvibrio japonic...
Feature 1       
NP_753079 471 LL 472 Escherichia coli CFT073
ADY60896  475 II 476 Planctomyces brasiliensis DSM 5305
EDX76443  459 FF 460 Microcoleus chthonoplastes PCC 7420
EAW34086  464 LF 465 Lyngbya sp. PCC 8106
CAL17590  459 PF 460 Alcanivorax borkumensis SK2
EDM74523  471 TV 472 Plesiocystis pacifica SIR-1
YP_760353 463 ER 464 Hyphomonas neptunium ATCC 15444
EDM82370  460 IS 461 Limnobacter sp. MED105
ABD80456  466 YI 467 Saccharophagus degradans 2-40
ACE83551  460 RL 461 Cellvibrio japonicus Ueda107

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