Conserved Protein Domain Family
CobW

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TIGR02475: CobW 
cobalamin biosynthesis protein CobW
The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two Pfam models which identify the N- and C-terminal domains (pfam02492 and pfam07683). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Statistics
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PSSM-Id: 274151
Aligned: 6 rows
Threshold Bit Score: 499.661
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAC46537       8 QRKIPATVITGFLGAGKTTMIRNLLQNADGKRIALIINEFGDLGVDGDVLKGCGAEACSEE----DIIELTNGCICCTVA 83  Sinorhizobium m...
BAB48762       5 VTRVPCTVVTGFLGAGKTTLVRHLLENAGGKRIAIIVNEFGDIGIDGEILKGCGIDTCPEE----NIVELANGCICCTVA 80  Mesorhizobium l...
BAC48527       4 LAKVPVTVVTGFLGSGKTTLIQHLLANPNGKKLAVLVNEFGSEGVDGQILKSCADANCPEE----NIVELANGCICCTVA 79  Bradyrhizobium ...
BAC09176       2 SAKIPVTIITGFLGSGKTTLIRQLLQNAAGRRIAVIVNEFGDVGIDGELLQAC----CDRTv---GIWELTNGCLCCTVQ 74  Thermosynechoco...
WP_003606629   4 VEKIPCTIVTGFLGAGKTTLVRHTVENARGRRLAIIVNEFGDLGFDGSFLAACGIEGCNED----SVVELPNGCICCTVA 79  Methylobacteriu...
WP_003113998   4 LAKLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELGIDGEILKQCSI-GCSEEeaqgRVFELANGCLCCTVQ 82  Pseudomonas aer...
CAC46537      84 DDFIPTMTKLLERENRPDHIVIETSGLALPQPLVAAFNWPDIRSEVTVDGVVTVVDSAAVAAGRFADDHDKVDALRVGDD 163 Sinorhizobium m...
BAB48762      81 DDFVPALDQILSLNPKVDHILIETSGLALPKPLVQAFQWPTVKSRVTVDGVIAVVDGPALAEGRVANDMDALQAQRAGDD 160 Mesorhizobium l...
BAC48527      80 DDFIPTMELLLARPVRPDHILIETSGLALPKPLLRAFDWPEIRSRITVDGVIALADAEAVAAGRFAPDPAAVEAQRAADE 159 Bradyrhizobium ...
BAC09176      75 DEFLPTMQTLLARRQEIDHIVIETSGLALPKPLVMAFRWPEVRHTATVDGVVTVVDGVALAAGQVSADLEALFAQKEADA 154 Thermosynechoco...
WP_003606629  80 DDFVPALTKLLDRPEPPEHILIETSGLALPKPLVQAFQWPAIRSRVTVDGVVAVVDGPAVAAGMFAEDPDALANQRAADQ 159 Methylobacteriu...
WP_003113998  83 EEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAFQWPEIRNACTVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDP 162 Pseudomonas aer...
CAC46537     164 NLDHE-SPLEELFEDQLTAADLIVLNKTDLIDAAGLKSVREEVASRISRKPTMIEARNGEVAAAILLGLGVGTEGDIVNR 242 Sinorhizobium m...
BAB48762     161 SLDHD-DPVEELFEDQIACADLIILSKSDLMDAAGSARANAIIGEHSARAVKIVSTSHGKVDPSVLLGLGLAVEDDIENR 239 Mesorhizobium l...
BAC48527     160 NLDHE-TPLSEVFEDQIACADIVLLTKADLAGPAGLEAAKAAITAEMPRRVPMLAVTDGAIDARVILGLGAAAENDLAAR 238 Bradyrhizobium ...
BAC09176     155 NLQHEdTPLEELFNDQLACADLVILNKADQLTPDQVQQCLRELRQQLPTRIKVLAAQQGQVPADLLLGFNAAVEENLGQR 234 Thermosynechoco...
WP_003606629 160 SVDHD-NPLEEVFEDQILCADLVVLNKADLLDAAGRDKVRADIQAHLPRAVEIVETEHGRLDPRVLLGIAAAAEDDLDAR 238 Methylobacteriu...
WP_003113998 163 NLDHE-SPLHELFEDQLASADLVILNKADQLDAEALARVRAEIAGELPAAVKIVEASRGELPLPVLLGLNAEAELHIDGR 241 Pseudomonas aer...
CAC46537     243 KSHHEmeheAGEEHDH-DEFDSFVVELGAIADPAAFTERLKGVISEHDVLRLKGFVDVPGKPMRLLVQAVGSRIDQYFDR 321 Sinorhizobium m...
BAB48762     240 KSHHD----GAFDHEH-DDFDTFIVDIPSIANPDELAQRVAAAAEQENVLRVKGFVEVGGKPMRLLLQAVGPRVNHYYDR 314 Mesorhizobium l...
BAC48527     239 PSHHD----GEEEHEH-DDFASVVIDLPEVGDVDALVASVQRLAREQNVLRAKGYIAVAGKPMRLLLQAVGERVRHQFDK 313 Bradyrhizobium ...
BAC09176     235 PSHHDfe----eEHDHdEEIQAVCLELG-VWDLQRLRQSLERLLHVPDIYRIKGFAAIEDKPLRLVVQGVGQRLDSFYDR 309 Thermosynechoco...
WP_003606629 239 PSHHg----EGEDHDH-DDFESVAIPVGIAGSPEDLSARVEKAAETEGVLRIKGFAEVKGKPMRLVVQGVGRRVASHYDR 313 Methylobacteriu...
WP_003113998 242 PT-HHdh-eGHEDHDH-DEFDSFHVDLPEVEE-AALLEALGELVERHDILRIKGFAAIPGKPMRLLVQGVGKRFDRHFDR 317 Pseudomonas aer...
CAC46537     322 AWASGQTRSTRLVVIGLH-DMDEPAVRAAI 350 Sinorhizobium meliloti 1021
BAB48762     315 AWTAEDDRRSRLVVIGLK-GLNRPAIERIL 343 Mesorhizobium loti MAFF303099
BAC48527     314 PWG-ALARQSKLVVIGEHgDIDEAAIRAGL 342 Bradyrhizobium diazoefficiens USDA 110
BAC09176     310 PWQAAETRQTRLVVIGRR--LDQRELLSHF 337 Thermosynechococcus elongatus BP-1
WP_003606629 314 PWKGSEPRDGRLVVIGLK-GFDQDAVAAAL 342 Methylobacterium extorquens
WP_003113998 318 KWLADEARSTRLVVIGQE--LDQAAIANQL 345 Pseudomonas aeruginosa
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