Conserved Protein Domain Family
COG5406

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COG5406: COG5406 
Nucleosome binding factor SPN, SPT16 subunit [Transcription, Replication, recombination and repair, Chromatin structure and dynamics]
Statistics
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PSSM-Id: 227693
Aligned: 3 rows
Threshold Bit Score: 1063.09
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
416769      1 MEELNIDFDVFKKRIELLYSKY-NEFEG-----SPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVII 74   baker's yeast
19173002    1 MPMIRLEEERFERRSRDIRKHL-----G-----GP--LVVMLGKSQDVLEFRINSALFIYLLGYEFPETILIVDDVCTAI 68   Encephalitozoon c...
19113318    1 MAEYEIDEITFHKRLGILLTSWkNEEDGktlfqDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITI 80   fission yeast
416769     75 ITSSAKAKHLQKAidLFKDPESKITLELWQRnNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAa 154  baker's yeast
19173002   69 TSQKKSAILRQIG------SLNIVVRNKDNS---NMDEIYKIFKGSYYVVGSE-EIVGDFCRDVLR-------------- 124  Encephalitozoon c...
19113318   81 LTSVNKANMLTK---LAETKGAAADVNILKR-TKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEP- 155  fission yeast
416769    155 VKEnEFNVIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMD-LLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQ 233  baker's yeast
19173002  125 ----RINASDVTDKLSEMFLTKDAEEIENCRASGAAVSVLMR----KGMEMLWDGAFEK--GKLEDLMGS---DVEG--- 188  Encephalitozoon c...
19113318  156 VKS-EFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSkYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQT 234  fission yeast
416769    234 LSPDLSalcppnyKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNgCILASCGIRYNNYCSNITRTFLIDPSEEM 313  baker's yeast
19173002  189 ---------------------------------IDMTPGEFSFPMEYTRD---RLRIGIRYNGYCSEMSRTIVT------ 226  Encephalitozoon c...
19113318  235 KSLKLG-------DIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD-VVLCSLGFRYKSYCSNVGRTYLFDPDSEQ 306  fission yeast
416769    314 ANNYDFLLTLQKEIVTnILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDyRKIQRGDC 393  baker's yeast
19173002  227 --NMEEAYMAQEYILG-LVRPGTDSGIIYSEAEKYLSSNGLEFGADFIYTVGLMS--KERSFQKPFTVEKG-------CI 294  Encephalitozoon c...
19113318  307 QKNYSFLVALQKKLFE-YCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNP-RVLQAGMT 384  fission yeast
416769    394 FNISFGFNNLKDSQSANN----YALQLADTVQIPLDEtePpRFLTNYTKAKSQISFYFNneEEDNNKKKSSPATKVPSKP 469  baker's yeast
19173002  295 FVINL-----------NN------------ETVSLSN-----------------TFLLG-----ETPEYLTLQDTAPDFL 329  Encephalitozoon c...
19113318  385 LNLSIGFGNLINPHPKNSqskeYALLLIDTIQITRSD--P-IVFTDSPKAQGDISYFFG--EDDSSLEDGVKPRKPPTRG 459  fission yeast
416769    470 DRNSKILRTKLRGEARGGAEDAQKEqiRKENQKKLHEKLEKNGLLRFSAADANGPDS-EPRQYFKKYESYVRDSQLPTNI 548  baker's yeast
19173002  330 DK-----RSRFRDKTKEHELNMRRK----EHQKELLDKIIEERLEFYRNLSDAGKDE---EKSEARIVPYSKESLVPRQG 397  Encephalitozoon c...
19113318  460 TATISSHKGKTRSETRDLDDSAEKR--RVEHQKQLASRKQAEGLQRF--AQGSVPSSgIEKPTVKRFESYKRDSQLPQAI 535  fission yeast
416769    549 RDLRIHVDWKSQTIILPIYGRPVPFHINSYKNGSKNEEGEYTYLRLNFNSPGSSGGiskKVEELPYEEsADNQFVRSITL 628  baker's yeast
19173002  398 ---RLIVDFARESIVVPIGSYAVPFHVSSIKSAAVTDDK---ILRINFKTESKGKE---ETEEAECEQ-RGESFLSTIKS 467  Encephalitozoon c...
19113318  536 GELRILVDYRAQSIILPIFGRPVPFHISTLKNASKNDEGNFVYLRLNFVSPGQIGG---KKDELPFED-PNAQFIRSFTF 611  fission yeast
416769    629 RSKDGDRMSETFKQIADLKKEATKREQERKALADVVQQDKLIENKTGRTKRLDQIFVRPNPDTKRVPSTVFIHENGIRFQ 708  baker's yeast
19173002  468 ISIRGNNSRDLLEEINSLKKGHLTKET--IEDVESLEELKISSRPLSLTDVYMKTDIRTGSR-KRKVGNLELHENGFRFK 544  Encephalitozoon c...
19113318  612 RSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQ 691  fission yeast
416769    709 SPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGGGRRgQsrfRRYGDE 788  baker's yeast
19173002  545 GED-----VVILFSNIRHIFFSEGNVETNAILHFHLLSPILTGG-KVVNVQFYREAGNTMVYDTMKRGD-----EHMEYI 613  Encephalitozoon c...
19113318  692 SPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKR-K---YMYGDE 767  fission yeast
416769    789 DELEQEQEERRKRAALDKEFKYFADAIAEASNGLLTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEV 868  baker's yeast
19173002  614 IEKEEE----DRQQAINQQFRSFVSSIESET--R--FKVQIPKAGFYGVPFRESVMIKQTHECLVSLDEAPYFVLTLEDV 685  Encephalitozoon c...
19113318  768 DELEQEQEERRRRAQLDREFKSFAEKIAEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEI 847  fission yeast
416769    869 EICILERVQFGLKNFDMVFVYKDFN----------KPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQ 938  baker's yeast
19173002  686 EVVNFERVVLTVKTVDVLFILRNRYpldvvmknksRLLVSILSVDVQSINKLKEYLDSNNVLFMETSASIRWNNVIGSIM 765  Encephalitozoon c...
19113318  848 EIAHLERVQFGLKNFDLVFIFQDFR----------RPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVN 917  fission yeast
416769    939 DDPYQFFLDGGWNFLATGSDDEAsDESEEEVSEYEASEDDVSDESAfsEDEEGSEVDDDISGDE--SEDYTGDEsEEGED 1016 baker's yeast
19173002  766 KDPISFYEDGAWSGLMVGDSEES-SEEEPETSEDLSSSDTETLSTD--DDDVSDISSEDLEEDE--SHNDSSDD-EDSED 839  Encephalitozoon c...
19113318  918 EDPIAFFEEGGWGFLGAPSDDEG-DDSVEEVSEYEASDADPSDE----EEEESEEYSEDASEEDgySESEVEDE-ESGED 991  fission yeast
416769   1017 WDELEKKA--------ARADRGANFRD 1035 baker's yeast
19173002  840 YEDEDSEE---------YDSEPGKRRK 857  Encephalitozoon cuniculi
19113318  992 WDELERKArqedakhdAFEERPSKKRH 1018 fission yeast
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